RNA id: XM_036968585.1


Basic Information

Item Value
RNA id XM_036968585.1
length 1707
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110520833
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10716613 ~ 10767669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGCAGTGCTCATAGATAGTGAGAGTGAAAAAGAGCGGGAGTTGGAGATTGAGAGGATGGGTAAAGGAGCGTAAAGGGGTAACACACACAatcgagagagggagtgaaagagggggcagagagatagagagagagaactgtgaaATCAGCCAACCCTCCCAGGCGCGAGGTTCTTGATTACTGTCAAGCACGCACACCATTCGGATATCGCTCCTGTGACAGCCAGGaTGAGTTCGTGCAGTAGCAGAGCGCTGACCATCCTGTCCACGGTTTTTGGGGCGTGTGGTCTGCTGCTGGTGGGCGTGGCTGTGTCTACAGACTACTGGCTGTTGATGGAGGAGGGCATCGTGCTGCAGCAGAACCAGAGCATGGAGGTCAAGATGGCCCTGCACTCTGGCCTCTGGAGGGTCTGCTTCGTGGCGGgGACAGAGAACGGGAGATGTGTGGCGTCAGAGTATTTCACTGAGCCAGAGATAGAGATCACCACAGAGAATACTGCTAATATTCTGAAGATGGTGCGGACGGCCACTCCGTTCCCCATGGTGTCTCTGCTCTTCGTCTTCACGGCCTTTGTCATCAGTAACATCGGACACATCCGGCCCCAGCGCACCATCCTTGCCTTCGTCTCCGGGATCTTCTTCATCCTCTCAGgcCTGAGTCTGGTGGTGGGGCTGGTGCTCTACATCTCCAGTATTAATGATGAGGTGATGAACAGACCGAGGGAGCCTGAACAATTTTTCAACTACCGCTACGGCTGGTCGTTTGCCTTCGCAGCCTCCTCCTTCCTACTCaaggagggGGCTGGGGTGATGTCAGTCTATCTGTTCATGAAGCGTTATGCTGAGGAGGAGATGTACCGCCCCCACCCAGCCCTCTACCGCCCCCGTCTGTCTGAGTGCAGCGACTACAGCGGCCAGTTCCTCCACCCTGAGACCTGGCCTCCTCCTAAGAGGGGCCGCAGTGACTCCCGGGCCTCCAGCGACATCTCCATCCAGATCAACCAGACCCCCCCGCAGCCCACCAAAAACCCCCTGCAGGGCAACCAAGGTGGGGGCATGGGGTCCAACATGGGCCCTGGGTCTGGGTCCTCCTCTGGAGCTAGCTACCAGCTGCCCCCACCGTCTGGGGCCTACAACACCCACACACTCCAACACCAACACTCACACGGTAACTCCCAGGCCATGGCCATGCCCCCTTCCACTGGCCCCCCTcattaccacacacacatgcacatgggCGCCTCCCCctgttagagagagggagcaagggacagggacagggaggaaCTAAGTTTGGAGAGCAAGAAATATGGAGTAAGTGTGAAAAGGGAGCGGGAGAAGGATTGAGGGATTAGTGTTAACATACATTTGGTATTAAAAACtgagagatgggcagagagagagaaagagggttcaggagaggtggaggagttgtcaaggatagagagatgagggggattttttaaatgttattttacctttatttaactaggcaagccagttaagaacaaattcttattttcaacaacggcctaggaacagtgggttaactgcctgttcagggatggagagaaagtgaCGGAGAATAAGGTATGTGATTTATTGAAAGAGGTTTAGAGGTTAGAATCTGTGACAAAAagggctgagagggagagagggagagagagggagaaagggagagacagggagaatgagacagggggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255032 lncRNA upstream 12541 10702913 ~ 10704072 (+) True G223255
TU255030 lncRNA upstream 15128 10700862 ~ 10701485 (+) True prkcg
TU255162 lncRNA upstream 65470 10650821 ~ 10651143 (+) True G223350
TU255161 lncRNA upstream 66870 10649316 ~ 10649743 (+) True G223349
TU255156 lncRNA upstream 75294 10635605 ~ 10641319 (+) True G223344
TU255222 lncRNA downstream 701 10753518 ~ 10767616 (+) False LOC110520833
TU255236 lncRNA downstream 701 10753518 ~ 10767669 (+) False LOC110520833
TU255211 lncRNA downstream 3313 10756130 ~ 10767669 (+) False LOC110520833
TU255216 lncRNA downstream 3313 10756130 ~ 10767669 (+) False LOC110520833
TU255218 lncRNA downstream 3313 10756130 ~ 10767669 (+) False LOC110520833
XM_036968582.1 mRNA upstream 14885 10661090 ~ 10701728 (+) False prkcg
XM_036968583.1 mRNA upstream 14885 10661090 ~ 10701728 (+) False prkcg
XM_036963819.1 mRNA upstream 111557 10431758 ~ 10605056 (+) True LOC110520829
XM_036968518.1 mRNA upstream 352940 10340929 ~ 10363673 (+) False LOC110508924
XM_036968528.1 mRNA upstream 352940 10340929 ~ 10363673 (+) False LOC110508924
XM_036968589.1 mRNA downstream 16821 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA downstream 16821 10769638 ~ 10827121 (+) False cacng8b
XM_021589928.2 mRNA downstream 123979 10876796 ~ 10878635 (+) False LOC110508993
XM_036968638.1 mRNA downstream 160264 10913081 ~ 10925718 (+) True LOC110509020
XM_021623027.2 mRNA downstream 188964 10941781 ~ 10944125 (+) True isoc2
TU254625 other upstream 404361 10311682 ~ 10312252 (+) True LOC110508886
TU254560 other upstream 440440 10274125 ~ 10276173 (+) True LOC110508845
TU254395 other upstream 803515 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 1034861 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 1105474 9606305 ~ 9611139 (+) True G222345
TU255234 other downstream 800 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 800 10753617 ~ 10767669 (+) False LOC110520833
TU255286 other downstream 16856 10769673 ~ 10826411 (+) False cacng8b
TU255285 other downstream 73698 10826515 ~ 10827279 (+) True cacng8b
TU255328 other downstream 100885 10853702 ~ 10856200 (+) False G223418

Expression Profile