RNA id: TU255254


Basic Information

Item Value
RNA id TU255254
length 6077
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id LOC110520833
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10716613 ~ 10767669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagaggagaggagaggagaggagaggagagtattaTAGACTATTGCGATGTTCCCACAGAATGGCGATGTGTAACTACTGCCCTCTGCTGGTCATTGGCCTACTCTGACACTACCATGGAAGGAGGGTCTGTTCCAATACTTTTAGAAAGCTCCCTGCCTTCTTATGAAGACACCGATCTAGCACAAGTCAGGCACAGTCATGTCATATCAGGGATTGCTccaaggaaggaaagaaggaatgcATTTTAGAAGTATTTGACCTGGGCCCTGGTCCATGGTGATATGTGCAATGGATGCCAACAGAATATGCAGAATATAGTAAGAACTGAAGCACAAAATGAAATTAATAATTTGGCTGCCATTATCACTGACTTGTGGTGGAAATAAGATGTTTGGGGGTGActgtgagggagagaaaggagttagtatacagctgagagaaggagagaaaggagtgagtatatagctgagagaggaagagaaattaGTGAGTAtatagctgagagagggagagaaagaagtgaGTAtatagctgagagagggagagaaaggagtgagtatatagctgagagagggagagaaaggagtgagtataaggctgagagagggagagaaaggagtgagtataaggctgagagagggagagaaagaagtgaGTATatagatgagagagggagggaaaggagtgagtatatagctgagagagggagagaaatttgtgagtatacagctgagagagggtgagaaaggagagagtatacagctgacagagggagagaaaggagtgagtatacagctgagagaaggagagaaaggagtgagtatacaactgagagagggagagaaaggagtgagtatactgctgagagagggggagaaaggagtgagtatacagttgagagagggatagaaaggcgtgagtatacagctgagagggagagaaaggagtgaatattaggctgagagagggagagaaaggagtgagtaaacagctgacagagggagagaaaggagtgagtatacagctaggagggagagaaagaagtgagtataaggctgagagagggagagaaaggagtgagtatacacctgagagagggagagaaatgagtgagtataaggctgagagagggagagaaaggagtgagtatcaggctgagagagggagagaaatgagtgAGTATatagctgaaagagagagagaaaggagtgagaatatagctgagagagggagagaaatgagtgagtatacagctgacagaaggagagaaaggagtgagtatacagctgagagagggagagaaaggagtgagtacacagctgagagagggagagaaatgagtgagtatacagctgagagggagagaaaggagtgaataTAAGGCTAagatagggagagaaaggagtgattATACagctgagaggaagagagaaaggagtgagtatacagctgagagagggagagaaaggagtgagtatacagctgagagagggagagaaaggagtgagcatacagctgagagagggagagaaaagagtgagtataaggctgagagagtgagagaaaggagtgagCATACAGctgcgagagggagagaaaggagtgagtataaggctgatagagggagagaaaggagtgagtatatagctgagagagggagagaaaggagtgagtatacagcatgacagagggagagaaaggagtgagtatacagctgagagagggagagaaaggagtaaGTATaaggctgagagggagagaaaggagtgtgtataaggctgagagagggagagaaaggagtgagtatatagatgagagagggagagaaaggagtgggtatattgctgagagagggagagaaaggagtgagtataaggctgagagggagagaaaggagtgtgtatcaggctgagagggagagaaaggagtgagtatacagctgagagggagagaaagctgTGAATATaaggctgagagggagagaaaggagtgagtatatagctgagagagggagtgaaaggagtgagtatacagctgtgtgagtgagagaaattAGTGAGTAtttagctgagagagggagagaaaggaggagaatacagctgagagagggagtgaaaggagtgagtataatgatgagagggagagaaagtattGAGTATGCAGCTGAcatggagagaaaggagtgagtatacagctgagagagggagataaaggagtgagtataaggctgagagggagagaaagaagtgagtataaggctgagagggagagaaaggcgtGAATATaaggctgagagggagagaaaagagtgagtatacagctgagagagggagggaaaggagtgagtttacagctgagagagggagagaaaggagtgagtataaggctgagagggagagaaaagagtgagcataaggctgagagagagagaaaggagtgtatacagctgagagaaggagagaaaggagtgagtatacagctgagagagggagagaaaggagtgagtatacagctgggagggagagaaaggagtgagtatacagctgatagagtgagagaaaggagtgagtataaggctgagagagggagagaaaggaatgaGTATAacgctgagagagggagagaaaggaatgaGTATACAGatgaatgagggagagaaaggagtgagtatacagctgagagagggagagaaattagtgagtatacagctgagagagggagagaaagtagtgagtatacagctgagagggagagaggtaagagtgagtatacagctgagagagggagagaaatgagtgagtatacagctgagagagggagagaaagtagtgagtatacagctgagagggagagaggtaagagtgagtataaggctgagagggagagaaaggagtgattATTTAgctgagagatggggagaaaggagtgagtataaggctgagagagggagagaaaggagtgagtacacagctgagagagggagagaaaggagtgagtataaggctcagagagggagagaaaggaatgagtataaggctgagagagggagagaaaggagtgagtatacagctgagagagggagagaaagtagtgagtatacagctgagagggagagaggtaagagtgagtataaggctgagagggagagaaaggagtgattaaacagctgagagagggagggaaaggagtgagtatacagctgagagagggagagaaaggagtgagtatgcagctgagagagggagagaaaggagagagcatacagctgagagagggagagaaaagagtgagtataaggctgagagagtgagagaaaggagtgagCATACAGctgcgagagggagagaaaggagtgagtataaggctgatagagggagagaaaggagtgagtatatagctgagagagggagagaaaggagtgagtatacagcatgacagagggagagaaaggagtgagtatacagctgagagagggagagaaaggagtaaGTATaaggctgagagggagagaaaggagtgtgtataaggctgagagagggagagaaaggagtgagtatatagatgagagagggagagaaaggagtgggtatattgctgagagagggagagaaaggagtgagtataaggctgagagggagagaaaggagtgtgtatcaggctgagagggagagaaaggagtgagtatacagctgagagggagagaaagctgTGAATATaaggctgagagggagagaaaggagtgagtatatagctgagagagggagtgaaaggagtgagtatacagctgtgtgagtgagagaaattAGTGAGTATTtagctgagagagggagagaaaggagtgagtatacagctgagagagggagtgaaaggagtgagtataatgatgagagggagagaaagtattgagtatacagctgacatggagagaaaggagtgagtatacagctgagagagggagataaaggagtgagtataaggctgagagggtgagaaagaagtgagtataaggctgagagggagagaaaggcgtGAATATaaggctgagagggagagaaaagagtgagtatacagctgagagagggagggaaaggagtgagtttacagctgagagagggagagaaaggagtgagtataaggctgagagggagagaaaagagtgagcataaggctgagagagagagaaaggagtgtatacagctgagagaaggagagaaaggagtgagtatacagctgagagaaggagagaaaggagtgtaTACAgctgagagggagggaaaggagtgaTTATACagctgagaggaagagagaaaggagtgagtatacagctgagaggtagtgaaaggagtgagtatacagctgagagagagagaaaggagtgagtaaacagctgagagagagaaaggagtgtatacagctgagagaaggagagaaaggagtgagtatacagctgagagaaggagagaaaggagtgtatacagctgagagggagagaaaggagtgagtataaggCTGAGAGGGAGACAAAGGAGTGAGTATACTGCTGAGAGGTAGTGAAAGGTGTGAGTATACATCTGAGAGGAAGTTAGAAAGGAGTGATTAtttagctgagagagggagagaaaggactgggtatacagctgagagagggagagaaaggagtgagtatacagctgagagagggagagaaaggagtgagtatatagctgagagagggagagaaaggagtgagtatacagctgagagagggagagaaaggagtgagtataaggctgagagggggagagaaaggagtgagtataaggctgagagaggaagagaaatgagtgagtataaggctgagaggggaagagaaaggagtgaatataagggtgagagggagagaaaggagtgagtaaacAGCTGAGatagagaaaggagtgagtatacggctgagagagggagagaaaggagtgagtataaggctgagagagggagagataggagtcACCATTTTGACCCCCTTCACTTTAACTTTGGTCAAGGTTTGGTTGAGGTCAAACTCTGTTAATGCTTTCCTTTTGTATGGCTTGGATGATGGTCTGTAGAGATGCCCAATATTTGATGACAACATTGTCCATCACCCTTTTCCATATTTGCTAGTTTTCATAAGCCTATCTTTATGTATTAAATAGTAGACCTAATAATAACTTTTTACATTAATCACTTTTCATACCTTTTGCTCAAAACACTAGGTAAAAACTAAATGTCAGTGATTAAATATTAAATTGAAtattaaattgattaaatattgatTGATGATAGTAGTAATTATTTCTTACTATTAAACCCTCTGCCctcactctttctgtctttctctctatccctgtttATACCTTCTGCTAACATGGGTCCTTTGTCCTGATCCATtctacattctgattgtgcccatatTTCCAGAAATGTGTCTGTTAATTAGATCACAATTAGATCACAATGGgtcttttgttttgtcttcacCTGTCtacaaatgtgggcacaatcagaatgtggacaagactAGGACAAAGGATGcaagttagaaccaggtataaacagggcttctGTGACTGTTCTTTCCTCCTGCCATTCAGTCTTCTTTTACAATCATTCACTCCATTATGATCATTACGTTTTAATAGAGAATTTGTAGAGACAATTTTGTTTATCTTTTCCCTCTGTCCCATTCTTCTCTCGCCGAATTCTTCTCCCCTGTTCCCTCATCCCCAAGTCTAATAAATTCAATGGTTTTcctgaaatcctggttggaaggttcgtggaataagcaggaaatcctttaaaaaataatttctggaaaaccagggaatttattgaaagttcctggaattttgcaacctgCACTCTTCTAGCACATAATGATCTTTGTAAAGACAGCACCTTTTTGCTCCTTGATGCACCGTCAAAGAAAAGAGATTGTCAATAGCTTCAACTAAATCCATGGAAATAATACTGTAGAATCTTGATTAAACTGATCCCATACTGATTGTGATTGTGATGACGTCAGTGTTATTGGAGGTGTAACAATAAAAGTCTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255032 lncRNA upstream 52058 10702913 ~ 10704072 (+) True G223255
TU255030 lncRNA upstream 54645 10700862 ~ 10701485 (+) True prkcg
TU255162 lncRNA upstream 104987 10650821 ~ 10651143 (+) True G223350
TU255161 lncRNA upstream 106387 10649316 ~ 10649743 (+) True G223349
TU255156 lncRNA upstream 114811 10635605 ~ 10641319 (+) True G223344
TU255288 lncRNA downstream 10214 10777883 ~ 10779973 (+) False G223385
TU255292 lncRNA downstream 10214 10777883 ~ 10779973 (+) False G223385
TU255290 lncRNA downstream 10938 10778607 ~ 10779973 (+) False G223385
TU255291 lncRNA downstream 10938 10778607 ~ 10779973 (+) True G223385
TU255284 lncRNA downstream 59720 10827389 ~ 10829316 (+) True G223381
XM_036968585.1 mRNA upstream 3313 10716613 ~ 10752817 (+) False LOC110520833
XM_036968582.1 mRNA upstream 54402 10661090 ~ 10701728 (+) False prkcg
XM_036968583.1 mRNA upstream 54402 10661090 ~ 10701728 (+) False prkcg
XM_036963819.1 mRNA upstream 151074 10431758 ~ 10605056 (+) True LOC110520829
XM_036968533.1 mRNA upstream 392457 10340929 ~ 10363673 (+) True LOC110508924
XM_036968589.1 mRNA downstream 1969 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA downstream 1969 10769638 ~ 10827121 (+) False cacng8b
XM_021589928.2 mRNA downstream 109127 10876796 ~ 10878635 (+) False LOC110508993
XM_036968638.1 mRNA downstream 145412 10913081 ~ 10925718 (+) True LOC110509020
XM_021623027.2 mRNA downstream 174112 10941781 ~ 10944125 (+) True isoc2
TU255198 other upstream 5727 10716651 ~ 10750403 (+) False LOC110520833
TU254625 other upstream 443878 10311682 ~ 10312252 (+) True LOC110508886
TU254560 other upstream 479957 10274125 ~ 10276173 (+) True LOC110508845
TU254395 other upstream 843032 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 1074378 9679760 ~ 9681752 (+) True G222353
TU255286 other downstream 2004 10769673 ~ 10826411 (+) False cacng8b
TU255285 other downstream 58846 10826515 ~ 10827279 (+) True cacng8b
TU255328 other downstream 86033 10853702 ~ 10856200 (+) False G223418
TU255329 other downstream 86033 10853702 ~ 10856200 (+) True G223418
TU255340 other downstream 109088 10876757 ~ 10878534 (+) True LOC110508993

Expression Profile