RNA id: XM_021589877.2


Basic Information

Item Value
RNA id XM_021589877.2
length 2715
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110508947
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10831566 ~ 10847242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatgttagcaccaggtataaacatgtccctctctctctcttcctttctctctctctccctcccctctctctctccaacactccCAACTTTCTCCCCTCTATTAAGTTCCAAGCTTCTTTCAATCTGAAGTGAACAACATATTCCAAACAGGGGGTGTTCCAGAAAAAACATACGCCATCCTTCCTCGTCacccagtcctctcctcctccacctttctCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTGAaccatccatctctttctcccctttcctcctcccattCTCCATCCCCACATCCACCTCTGAACTGCTGTTATCTGTGTCTCTACCTTCCTTCAGTCTTCAACCTTCCTTTCTTCTTTTTGGGGTTCACCCCCCTTCAATAAtttccctgcttctctctcttcactctctttcccgtcctcttccctctttccctcccttcctctctccatccgaCCTCTCTCGGCCTCTGGTAGAGGTCACCATGTGGGCCAACTACATTGTCCAGCCAGAGGAGGATGGCCGTATGGGGGTGGTAGGAGCTGGGGCCCATGGGGGCCTGGCCGGCCTGGCAGGGGTGAAGGGAGGGGGGCGTGCTACGAGGCGGACCCCTAGGATGAGTGACAGCCAGGAGGGGAAGATCAAGCTGGCGTTCTTTGTGGCCATTGTGGGTGTGACCCTGACAGTGCTGGGGGTGGGAACAGAGTTCTGGGTGGAGCTGGCCACGCCCAAGACCTGGAGTAACAACCAGACGTGTCAGACAGCCCACTACGGCCTGTGGAAGGGGTGTACCCGCACCCTGTGGGTGGACGACATCGaccccgagagagagagctgcgGCCCCGCCGATCTGCCCGGAGAATCCAACTGCACTTACTTCAAATTCTTCACCAATGGACACAACGCAGTCATATTTAAGAAGACGACCCACAAGAacctGAACATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtCTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGCTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGACCTGTGTGGGCTTCGCTGGGGCCATCCTCATCATGGGGGGGATCCTTTTCCTGATCCTCTCCCTCCCCTATAGCTCCTGGGAGAAATGTCTGCCTCAATGCAACAGCAGCACTACCTAGCACAATGGAGGCCCAAAAGAGGCCCAAAAGCACATAACTGGGGGAAAAATGGGGGAaaaatgtttagttttatatCAAGATTGTAAtcaaactccagtcctcgagggaaGCACTGTCTACTGGCTTTAGTTGTCAATTATAAATCAGACACTGATCAGAACAACTACAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTGTCAGTCTGCTGGCTTTAGTTGTCAGGTATAAATCAGACACTGATCAGAACAACTACAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTGTCAGTTATATTGTCAAACTAGACTGAAAGACTGACTAACTTGTAGGTCGACACAGTGTTTACTTAATGCAATAACAATGATGCTCACTAACTGTGCCTAGAACTCTACAAGTCTGCCCTAAAGCCTGCGACCTTACCAGAAAACACTATGTAGACCACAACTTCCCCACTTTTTGGCATCATGACCAACCTATATCTTTTAGAAGTTTCTGATGGCCTACCAAAGAACAAGCAATGTTTCTAAGCAGAACCCGGTCTTTACCAGGGGGGTAATGCTGGgttaaacaaaaccaaagcatggattgatGTCTTAACATGTCCATTGACTGCtaacagggtaaggaaaccaatatgtcatttAGTTATTGATCTAGTTCTTTAAACACAACGCCAACCACACTGTAGTTGTAGATAAAGACCCAGCAGGGTGTAGCATCCTGTCTGTACTATGAACTGTGTACTAACCATTACTTATTGATAGTGTTACTTAGCCAATTAAATCACATGGGGGAGGGGCTGCTATGGGTAGGTCACTACCGTTGCTAAGGGAGGAGATACTTTATTGTTTCCAGGAAGTGGCACAGCCATCCCTGCTACATGAAACGCCTTGCAGGTTGTCACTATTAATCTATTATGAATGATTATGACGCCTTACACTTAATACCTAGAAATAATATATTCTCTATTTATTATCTACACATTGTCCACATGAATGAATGCTGTTTTTAAGTAAGAATGTGTGAATGATTTAATGTATGTATGGAAATATTGTATAGACTCACTTTACAAGCACAGCTCTGTATATAAAATATgtgtttgtattttatttataccTGCACACTGTAGCCTTTTGTTCAAGCTTAGGGgggtgtttttagtttttagctTATTCAAACCCTTTTTTTCATCATGTGTTTTATTTGTCTTAATAAAGCCCACCTTGTCTTTCTCTACCTACATGTTTGTTTGGGGAAAACCACATTGTGCCTAAATGGTCCTATGATCATATGTATGTCTCACTGGGTTTGCTTTTGAAATAAATAGATTTGACATAAGAAACGCTCTCA

Function

GO: NA

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255660 lncRNA downstream 2256 10827408 ~ 10829310 (-) True G223688
TU255615 lncRNA downstream 51590 10777319 ~ 10779976 (-) False G223652
TU255616 lncRNA downstream 51590 10777881 ~ 10779976 (-) False G223652
TU255617 lncRNA downstream 51590 10778605 ~ 10779976 (-) True G223652
TU255570 lncRNA downstream 133004 10697259 ~ 10698562 (-) True G223627
TU255674 lncRNA upstream 1166 10848408 ~ 10848704 (-) True G223702
TU255675 lncRNA upstream 1704 10848946 ~ 10849353 (-) True G223703
TU255679 lncRNA upstream 55319 10902561 ~ 10902795 (-) True G223707
TU255682 lncRNA upstream 62994 10910236 ~ 10910496 (-) True G223710
TU255683 lncRNA upstream 64029 10911271 ~ 10911708 (-) True G223711
XM_036968571.1 mRNA downstream 418494 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 421074 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 421077 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968556.1 mRNA downstream 421079 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968564.1 mRNA downstream 421079 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968611.1 mRNA upstream 6460 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 6460 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 6460 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 6460 10853702 ~ 10865262 (-) True LOC110508966
XM_036968625.1 mRNA upstream 18293 10865535 ~ 10876129 (-) True LOC110508957
TU254793 other downstream 808363 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 808381 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 816674 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 828672 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1148195 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 223704 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 324878 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 428675 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 880120 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 905609 11752851 ~ 11753680 (-) False G224869

Expression Profile