RNA id: XM_036968608.1


Basic Information

Item Value
RNA id XM_036968608.1
length 4030
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110508966
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10853702 ~ 10865262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGTATATCAACTTCCGGTGTCACGGGGTGCCTGGGAGACGAAACGCAAAAAGCGGGCATACCGGACATATTCCGTATTTTCTCATTGTATACATTTAATTGCAAAACATATATATTGGGACGATTTCAAACACCAACAGGACAGACGGCATAACATTGGATGTGCAATTGTACCAGCATATCCGTATTCACTCGATTTGCTAACTAGTTAGCATTAGCTCACTACCACGACTCCTTCAAGAACAGGCCCCAGCCTGGACTTTGCTTTAGCTATCTAACTAGCTAGCACAATATAACGCGATTTCTTCGTCAATGTTATGGTCTTAGTGTAAACTAGAACCACATCTTTATAACTCACTTGGAGTTGTTCATGTTGATGTGTGGTTCATTTAGATATTTCTAAACCGCTGCATTGCCGTTGTGTATCTAGTTAGCAAGTGTGTTGTGCACTTTTTCGCTAGCGACCGCGCCGCATTCCCGTCCATTTTACAGTcacaactaactagctagctagggctAGCAAATAAGAAACGGCGATGTCGGATTTCGACGAATTCGAGAGACAACTGTCTGAAAACAAACAAGctcagttggtagagcatggcgcttgcaacgccaggataggGCGCTCGATTCCCGGGAACACccCGGAGAAGGACAAGGAGAACCGCCACCACCGTCGCTCCCCCTCTCGCAGCCgcagcagagagaggaagaggaggagcagagacaAGGACAGACGCAGCAGGGATCGCCGTGGAGACAGCAAGGAGCGCAGACCGAGACGCAGTCGTTCCCCGCACCGTGAAACGAAGAAGAAGAACAAAGTGAAGAAGTACTGGGACGTCCCTCCTCCTGGCTTTGAACACATCAGTGTGATGCAGTACAAAGCCATGCAGGCTGCGGGTCAGATCCCAGCCACGGCCCTGCTGCCCACCATGACCCCAGACGGCCTGGCCGTGACCCCCACTCCCGTCCCTGTGGTGGGAAGCCAGATGACCAGACAGGCCCGTCGGCTTTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAGTCCATGATGGATTTCTTCAACGCTCAGATGCGTCTGGGTGGTCTCACTCAGGCTCCAGGAAACCCCGTCCTCGCTGTTCAGATCAACCAGGACAAGAACTTTGCCTTCCTCGAGTTCCGCTCAGTGGATGAGACAACCCAGGCCATGGCGTTCGACGGCATCATCTTCCAGGGACAGAGTCTGAAGATCCGCCGTCCCCATGACTACCAGCCCCTGCCCGGCATGAGCGAGAACCCCAGCGTCTACGTGCCTGGCGTGGTGTCCACAGTGGTGCCTGACTCGGCCCACAAGCTTTTCATCGGAGGCCTGCCCAACTACCTGAATGATGACCAGGTGAAGGAGCTCCTGACATCGTTTGGGCCTCTCAAGGCCTTTAACTTGGTCAAGGATAGTGCCACAGGTTTGTCTAAGGGTTATGCGTTCTGTGAGTATGTAGACGTCAACCTGAACGACCAGATCACCATGGAGAATCAGGCCATAGCAGGACTCAACGGCATGCAGCTGGGAGATAAAAAACTCCTGGTGCAGAGAGCCAGCGTGGGATCCAAGAACGCCACTCTGacAAGTATAAACCAGACCCCGGTGACGCTGCAGGTGCCGGGCCTGATGAACAGCTCAATGACACAGATGGCCGGCCTGCCCACAGAGGTGCTGTGTCTGATGAATAtggtggctgtggaggagctggtGGATGAAGAGGAATATGAGGAGATCGTGGAGGATGTGAGGGACGAGTGCAGCAAGTACGGCCAGGTCAAGAGCATCGAGATCCCCAGACCTGTGGATGGGCTGGAGGTCCCTGGCACTggcaagaTCTTTGTGGAGTTCATGTCAGTGTTTGACTCCCAGAAGGCCATGCAGGGTCTGACGGGCAGGAAGTTTGCTAACCGGGTGGTGGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGACTTCTGGTAGAGGATGACGACAGACGAGGATAGCGAGGGGGGGGGTGGATTGTCATATTTCAAATCGACCCCTAACCCCATACCACCTAGGCACTTTTTTTGACCTGAAAAGGTGTGAGCGACATAATGTTTCACCTAGTCCATCAGAAGGCCAGGTGGAGTTCAGAGAAGTACCCGGGGGTAGGGGCTGGGGATCCATTTGCTATTGGGcaaaagagaagggagagatgaagggtTTGTATTCTGATGAAaaccgggggaggggggggggtcaaagatTTTTGTGAATTGTGTGTAGTAACAGGACAggggtaaatgattttttttttaaatactttgtGAGAAAGAGATGCGTCATTCTGGGGGGGGGGTCTTGCCACACCTTATGGTTTGTATTTAAATGGAGGGAGCCTGTTTTAAGTACTTTGGGAAGGTGTAGAGAGGGGGAAGTGGACTGGTCTACTCTATAAGAGtggtggatagatggatggacagGAGTATTCATCATTTCATATGGGGAGAGGGAGTTGGTGACAGTTTTTATTTGGCCCACCAATGTAGATAACATGGTCAGTTTCTTGTTGTGAAAAAGGGGAAGGAAAGCTGGAAAACTATTGACAGGATAGCATGGAAAACTATTGACAGGATAGCATGGAAAACTATTGACAGGATAGGATGGAAAGCTATTGACAGGATAGGATGGAAAGCTATTGACAGGAATGGCCTCGTTTTGCGATTTTTATTTCTCAGATTTGGACCTTTAGATTTCCTTGTTTCTTTTCTTCCATGTACATCAGACTAagcccctctccctgtgtgtgtagcGAGAGGGGGAGAAGCTGTAACTACACATAACCAACTCCAATGTCATATTGGACTAATTTATCTGAATGTCAGCTGTTGTGGTTTATACTGTCACACCTTAAAGTTTGAGTACCATACGTTTTTATTACTGTCTGTGtctttgatgtttttttttgtttttggatTGAaacctttcatctagtttgaattTATCCATCGCCATTTTTAGCAGGCAAAATAATTCtgtccctacaccctacccttaCCCataagagactgggagaggggaaAGGCAGACTTTTGAAGTTCTGAGTTGTTATTTTTGAATTGTGAGTGGTAAATATTGGATTGGTGTTGAGTAGGGCTCGATCTGATTCTGATTAAAAGCCTTGCTATTTTTCATGTCACATTCAAGATAAAAATATATGGAGTACTCATTCATGTCTGTGCTTAGCAAGTTTGTCAATACATGGAGTCATTTCATGCTTTGGTATTTTCAGGTAACAATGATTTAAGGTTGTAGTCAGTATTCAAGTTGTATTTCTTTGTCTGGAATTAGTTTCTTTTGTTTTGCTTCCTGTTTCAAACCTACCTATAGAATATTGGACTGCTCATACAGAAATCTCTTTGGCCCAGGTAGTGTTTGTGTAACTTCTCACCTCAGCAGACAAAATAAAGGTATAAAGACTAATACCACTGTTTCCTGTTCTACTGCCCACAAATAAAATGCACTATTTACTTTGACCAAGTTATCAGGCTTTTAGTAACCATAGAAGTCAGGTAGTATTGTGTGATTGTACACCTCTTCTGTTAAGTAATGGGTTTGTTGTCACAAAGGGTGAGATGGAGATGTTAAACAGATGTTTTTTTTAACTGAAGGGGAGTGCAGTCTTTTGGACAGGTTCTCAAGTGTTCTATTGGACTGTTCAACAATGTTCATACTCATCAAAAGGTTGTCCCCTCAACTGTATATATGGTCTCACTTCTTCCTCATCTCCCTCAACCTTTGTCATTACGACTCCAAGGACCACTGGTTACACTGGGGTTGAGAGGGAGTTCCCATGATGCTTTGTGTTCAGACCTAGAGTTGGACAGTACCAGGGAAATGTGACTTCCTCCCTTTCTAAAATTAGCTTTTTAAATGTTACCATGTCATTTAATTTGAGCTTTTTGGGGGGGGAAATGTGATTTCTTAAGTGAATTAATGGAATAAAAAATGGCTAAAACCACA

Function

GO: NA

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255675 lncRNA downstream 4349 10848946 ~ 10849353 (-) True G223703
TU255674 lncRNA downstream 4998 10848408 ~ 10848704 (-) True G223702
TU255660 lncRNA downstream 24392 10827408 ~ 10829310 (-) True G223688
TU255616 lncRNA downstream 73726 10777881 ~ 10779976 (-) False G223652
TU255679 lncRNA upstream 37299 10902561 ~ 10902795 (-) True G223707
TU255682 lncRNA upstream 44974 10910236 ~ 10910496 (-) True G223710
TU255683 lncRNA upstream 46009 10911271 ~ 10911708 (-) True G223711
TU255689 lncRNA upstream 53427 10918689 ~ 10920990 (-) True G223717
TU255701 lncRNA upstream 79257 10944519 ~ 10944813 (-) True G223723
XM_021589877.2 mRNA downstream 6460 10831566 ~ 10847242 (-) True LOC110508947
XM_036968571.1 mRNA downstream 440630 10397064 ~ 10413072 (-) False pitpnc1b
XM_036968575.1 mRNA downstream 443210 10397064 ~ 10410492 (-) False pitpnc1b
XM_036968546.1 mRNA downstream 443213 10397064 ~ 10410489 (-) False pitpnc1b
XM_036968564.1 mRNA downstream 443215 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968625.1 mRNA upstream 273 10865535 ~ 10876129 (-) True LOC110508957
XM_021589917.2 mRNA upstream 13447 10878709 ~ 10895912 (-) True LOC110508973
XM_036968647.1 mRNA upstream 62733 10927995 ~ 10936251 (-) True si:ch211-149k23.9
XM_036968666.1 mRNA upstream 72180 10937442 ~ 10941795 (-) True LOC110537203
XM_036968678.1 mRNA upstream 84871 10950133 ~ 10968496 (-) False epn1
TU254793 other downstream 830499 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 830517 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 838810 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 850808 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1170331 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 205684 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 306858 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 410655 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 862100 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 887589 11752851 ~ 11753680 (-) False G224869

Expression Profile