RNA id: XM_036968638.1


Basic Information

Item Value
RNA id XM_036968638.1
length 1548
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110509020
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10913081 ~ 10925718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCTCTCTACTGCTGACACAGCTGGGTCATGACTCTttgctctgcctccctctctgttctttctccctgATATTGAAGGCTTTCGTTGATGCATGGTTCCTAGTGGTACACTGGGTAACACTTCAGTCATTGTAGAGATCTGATTGTCCTTGTTGGCACTACTTCAGAGAGCTTTCGACCATAACTCAGAGATCCCAGTACAGGCTAATACGATGGGGAACGCCAAGAGCAGTGCTATTTCCAAGGAGATCCTGGAGGACCTGAAGCTCAACACCAAGTTCACGGAGAACGAGTTGTGCCAGTGGTACGAGAACTTCCAGAAGCAGTGTCCCACCGGACGCATCTCGCCAGAGGAGTTCGAGACGATCTACGCGCGCTTCTTCCCCGATAGCGAAGCCAAGACCTACGCTCAGCATGTGTTCCGTTCATTCGACACCAACGAGGACGGCACTCTGGACTTCAAGGAATACATCATTGCACTGCACATGACCTCCAGTGGGAAGACGACGAGGAAGCTGGAGTGGGCCTTCTCACTGTTCGACGTGGACAAGAACGGATACATCACCAAGACAGAAGTGGAAGTCATCTGCCAGgcCATCTTTAACCTAATCCCCAAGGAAGATCTGCCCAAGTTACCAGCCGACGAGAATACACCAGAGAAGAGAGCCAACAAACTGTGGGGATACTTTGAGAAACCAGACAACGacCGGTTGGCAGAGGGAGAGTTCATCAAGGGGGTGACGGAGAACGAAAACGCCATGCGTCTCATCCACTACGAACCCATCACTGACTAGTCATCCCttcttcttcccctctttctccttcacacactatttcttcctctcctcctctttgtcATTGTATTCTAGtgttctgtctttctcttctgTGTAAATACTCTTGTATGGTGGTGTCTTAATTGTCTTCACTGTACCTTCTAAGAAAGTAGGGGTTTATGTTGGTTATGGTATACATGTCTGTCTGTGCATGTATGCCTAATGGATTGAGGCTGTTTTATGAAGGTAGATGTGATAAATATGAAGGTAGATGGCCACTATTGTAATTAGTGTTTGATGCAATATAAACACGACAGAAACATTGAGGCATAAGTATATTTATTTGTTTGTATATTGATACAATATCCCTGCTAAATGCTGTTTTCCTATCAGATTGAAGTTACAATAGCTTTTTGGTACTGTGAGATGATTGTGAAAAAGTAATGGTGGTCTAGTGTTTAGCAGTGTCCTGAATACTCATGGACTTGATCATTTGGTAACCATTGCTCATTCTATGCATTTCATTATTCTAAGAAGCTCTAAATGGTGTTGCTGTAGAAGGAAAACTTGAAATGTGCAAATGTGATAAATGGTAACAGTTTGGACACAGGTATTTGGGAAAAGAAATTGAAAATCTGTAGAACAAAAAACCTTTTCTCCATTAGGAATTTGCATGGTTGTGATGGCGGCTTTTAGATTTTTATCCTGCAATTGTCTTTTTGTTTTAATCAAAGAGTTATACGCTGCATATGGTGGATTAAAGCTTTTCT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255366 lncRNA upstream 3399 10909452 ~ 10909682 (+) True G223449
TU255361 lncRNA upstream 9555 10903179 ~ 10903526 (+) True G223444
TU255358 lncRNA upstream 12173 10900596 ~ 10900908 (+) True G223441
TU255335 lncRNA upstream 40897 10868327 ~ 10872184 (+) True G223424
TU255332 lncRNA upstream 55204 10857553 ~ 10857877 (+) True G223421
TU255345 lncRNA downstream 23225 10948943 ~ 10950025 (+) True G223433
TU255728 lncRNA downstream 57062 10982780 ~ 10983332 (+) False LOC110537149
TU255734 lncRNA downstream 63357 10989075 ~ 10989274 (+) True G223752
TU255739 lncRNA downstream 76412 11002130 ~ 11002335 (+) True G223757
TU255769 lncRNA downstream 146900 11072618 ~ 11077866 (+) True G223775
XM_021589928.2 mRNA upstream 34446 10876796 ~ 10878635 (+) False LOC110508993
XM_036968589.1 mRNA upstream 85960 10769638 ~ 10827121 (+) False cacng8b
XM_036968594.1 mRNA upstream 85960 10769638 ~ 10827121 (+) False cacng8b
XM_036968585.1 mRNA upstream 160264 10716613 ~ 10752817 (+) False LOC110520833
XM_036968582.1 mRNA upstream 211353 10661090 ~ 10701728 (+) False prkcg
XM_021623027.2 mRNA downstream 16063 10941781 ~ 10944125 (+) True isoc2
XM_021623014.2 mRNA downstream 19907 10945625 ~ 10947532 (+) True foxj2
XM_036968716.1 mRNA downstream 57102 10982820 ~ 10995885 (+) False LOC110537149
XM_036968731.1 mRNA downstream 110520 11036238 ~ 11041281 (+) False mfap5
XM_021590033.2 mRNA downstream 241201 11166919 ~ 11174363 (+) False LOC110509074
TU255340 other upstream 34547 10876757 ~ 10878534 (+) True LOC110508993
TU255328 other upstream 56881 10853702 ~ 10856200 (+) False G223418
TU255329 other upstream 56881 10853702 ~ 10856200 (+) True G223418
TU255285 other upstream 85802 10826515 ~ 10827279 (+) True cacng8b
TU255286 other upstream 86670 10769673 ~ 10826411 (+) False cacng8b
TU255351 other downstream 24431 10950149 ~ 10952739 (+) True G223434
TU255732 other downstream 68340 10994058 ~ 10995415 (+) True LOC110537149
TU255727 other downstream 110559 11036277 ~ 11041260 (+) True mfap5
TU255730 other downstream 116130 11041848 ~ 11043692 (+) True G223748
TU255809 other downstream 241291 11167009 ~ 11174363 (+) True LOC110509074

Expression Profile