RNA id: XM_036968666.1


Basic Information

Item Value
RNA id XM_036968666.1
length 558
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110537203
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10937442 ~ 10941795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGAATCTAGTGCACACACTCATGATAAGGACTGCTGAGGATGTCTGACAACGCAGAGTCTCCTACAGAAACGCAAAAAGATGAGCCTTCAACCCCACAACAGCCTACGGAAGACTCGGGGATGGCAGACGATAAGAAAAAAATTGATGTGTTGTTGAAGGCAGTAGGAGACACCCCCATCATGAAGACAAAGAAATGGTCGGTAGAGAAAGGGAGGACAGTGCAATCACTCTCTCAATTCATCTCTCGATTCCTCAAGATGGAGGCCAATGAACAGCTGttCATTTACGTCAACCAGTCATTCTCTCCCTCGCCTGATCAGGAAGTAGGAGTCCTGTTTGAATGTTTTGGCAGCGATGGGAAGCTTGTTCTACATTATTGTAAATCTCAAGCCTGGGGTTAACAGTTTTTAGCCCTTTTCAGTTcaaacgcatacacacacaatatTGTTTATACTCCTTCCTTGCCTAAACCAATGTTGTCATTGctaatttcttgtttgttttgctGTACATAACCAAATGTAAATAAatcatgactatatacagtaaaCCCA

Function

GO: NA

KEGG:

id description
K08336 ATG12; ubiquitin-like protein ATG12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255689 lncRNA downstream 16452 10918689 ~ 10920990 (-) True G223717
TU255683 lncRNA downstream 25734 10911271 ~ 10911708 (-) True G223711
TU255682 lncRNA downstream 26946 10910236 ~ 10910496 (-) True G223710
TU255679 lncRNA downstream 34647 10902561 ~ 10902795 (-) True G223707
TU255675 lncRNA downstream 88089 10848946 ~ 10849353 (-) True G223703
TU255701 lncRNA upstream 2724 10944519 ~ 10944813 (-) True G223723
TU255715 lncRNA upstream 32424 10974219 ~ 10974422 (-) True G223734
TU255909 lncRNA upstream 41112 10982907 ~ 10983190 (-) True G223881
TU255919 lncRNA upstream 52880 10994675 ~ 10995433 (-) True G223886
TU255935 lncRNA upstream 96667 11038462 ~ 11039737 (-) False G223898
XM_036968647.1 mRNA downstream 1191 10927995 ~ 10936251 (-) True si:ch211-149k23.9
XM_021589917.2 mRNA downstream 41530 10878709 ~ 10895912 (-) True LOC110508973
XM_036968625.1 mRNA downstream 61313 10865535 ~ 10876129 (-) True LOC110508957
XM_036968608.1 mRNA downstream 72180 10853702 ~ 10865262 (-) True LOC110508966
XM_036968606.1 mRNA downstream 72181 10853702 ~ 10865261 (-) False LOC110508966
XM_036968678.1 mRNA upstream 8338 10950133 ~ 10968496 (-) False epn1
XM_036968693.1 mRNA upstream 8338 10950133 ~ 10968496 (-) False epn1
XM_036968701.1 mRNA upstream 8338 10950133 ~ 10968496 (-) False epn1
XM_036968711.1 mRNA upstream 8338 10950133 ~ 10968496 (-) False epn1
XM_036968682.1 mRNA upstream 8338 10950133 ~ 10968515 (-) True epn1
TU254793 other downstream 914239 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 914257 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 922550 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 934548 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1254071 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 129151 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 230325 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 334122 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 785567 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 811056 11752851 ~ 11753680 (-) False G224869

Expression Profile