RNA id: XM_036968693.1


Basic Information

Item Value
RNA id XM_036968693.1
length 4427
RNA type mRNA
GC content 0.47
exon number 12
gene id epn1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10950133 ~ 10968515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACCGGAAGTTCCGCCATCTCCTTGTATCATTCGAGCTACAACAGGGTCAGTATAGACTTAATTTAGATGTTAAGTATGGTATATTGTCAACAGTTATTAAATATTATAAGTAATATTGACAGAGTGAACGTTCCATAACCATCAGTTTTATGTTAAGGATGGTGGTGTCACTCGATCAGATCATAAATACCACTCCTATTCTGTTGCCACTTGAACTGCTAGCAACAGGGTTCAACGTTATCTCATCTGTTTTATGCCGTTGGCTACTTCAGCTACCTAGCTAGATTTTCCGTGGAAACCGACAGCCAGACGGTTGCCAGTTGCCATGTCGACCTCATCGCTACGGCGACAAGTGAAGAACATTGTCCACAACTTCTCGGAGGCAGAGATCAAGGTGCGGGAAGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCAGACCTGACCTACAACGTAGTGGCCTTCTCTGAGATCATGAGCATGGTGTGGAAACGACTCAACGACCACGGCAAGAACTGGAGACACGTCTAcaagGCTATGACTCTCATGGAGTACCTCATAAAGACGGGTTCAGAGCGCGTGGCTCAGCAGTGCAGAGAGAACATCTACGCTGTCCAGACTCTCAAGGACTTCCAGTTCATCGACAGAGACGGCAAGGACCAGGGGGTGAATGTGCGGGAGAAGGCCAAACAGCTGGTGACACTGCTGAAGGACGAGGAGAGACTACGAGAGGAGAGGATCCATGCCCTCAAGACCAAAGAGAAAATGGCACAGACCACCAGTGCCTCTTCGGCCCCCTCAGCTCCAGGTCTGGGGGGTGGAGCGCTGTCTCAGGGCTCTCACTCTGGAGGGGCGGACCCAGAGCAGGCGTGGCCACAGAGCTCCGGGGAGGAGGACCTGCAACTGCAGCTGGCCCTGGCCATGAGCAAGGAGGAGGCGGAACAGACTACTGTGGCCCCTCTGGAGGACGCAGAGCTCCGCTATGCACTCACACTCAGCAAGGAAGTACAAGAACAGGAGGAGAGGCTGCGCAGGGGGGACGACCTGAGACTGCAGATGGCCATCGAGGAGAGCAGGATGGAGAAGGCCAAGCCAGAGGAGAGTGCGTTAATGGAGCTGAGTGCTGTGGACCCCTGGGGGgctcctgctgctgcctctgGGGGCTCTGCCGGCCCCTCAccccctcccacagtccccctCCCAGCCCCCTCTGCCTCTGGCCCCTGGGGCCTGACCCCTGCAGACCCTTGGGGAGCCTCGTCGCCTGCCTCACCCCCCAGCGTAGACCCGTGGGCTAGTGGAGGGACGGCCCCCCCAACGATAGCCCCCCCGCCAGACCCCTGGGGAGAGACAGCCTCCTCAAGAGTCAACTCCGTTGACCCCTGGGGACCCTCAGCTGTGACCCCCCCCAGTGTCGACCCCTGGGGCCCCTCTGTGcccctctccaccacctcctctttTGGGGGGCCAATAGACCCCTGGGCTGGGGACGGGGTTGACCCCATCATCACCTCTGACCCATGGAGCGACTCCGCCAAACACACTAATGGCACAgGACACCCAGAACTGCGAGGTCAGTTAACGGGCGATAGTGCGGGTTCTCCGGTGCCCTTTGACCTCACATCTCTGTGCTCTTCACTTCCTGTCCGTAAGACCCCCGAGTCGTTCCTGGGGCCCAACGCATCTCTGGTGGACCTGGACTCACTGGTGTCTTCTAAACCCAAACCTAAacaacctcctcctccatcaaTCTCCTCCTCAACACACAACCCCTTCCTCCAGACTACAGcctcgTCTTCAGCCCCTGGCATGGCAGTCACCCCGGGCAGCACAATCTCCAGCAGGGGGGTTTCCCCGACGCCACCCCCCACCTCCAACCCGTTTGGAGCGGCCGCCCCCATGTCCTCCATCTCCCCACAGCCCTCCACACTGGGCCTCAGCAGCCTCCGCACCAGCCCTGTACCACCCAACCCCATGGCATACCCTGGCATGGGCTTGGGGCCTATGGGTATGGGAGCACCAGGCCTGGGGATGGGTATGATGCAGAGCCCCATGGGAATGTCCCCCTACGGCGGGCTCTCGCCCATGGGTCCTCCTGGGTCCTCTCACTTCATGGGGCCCGGAGGGACCCTGCCCCCACAGCTGAATTTTGGGGGGCCTACGGGGGCAGCTGGAGTGATGGGAGCCGGGGGAGCAGTGGGAGGGGCCGGAGTGACGGGCGCCAGCACCAATCCCTTTCTTCTTTGAGGGCGTTTCGGCACTCCCCGTTCCTCTTCAACACCCAATCCAGGCCCTGCCCCACCCCCTGGCTCATCTACTGCCCCCCCTTTCCCCCCCAGAGCGATCCTCCTTCAACACAAACAATTTATGTTTCCAATAAGAAACGTGTGTACATCTCTATATTTAAAGAAAATCTGAATTTGTTATTTTCTTTCAGAAGCATTTCCATGTATTTTTCTCCTAGCTCAGATGAATTTACATGTATTTATCTCCTAGCTCAGATGAATTTCCATGTATTTTTCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATgaatttacatgtatttttctcCTAGCTCAGATGAATTTCCATGTATTTTTCTCCTAGCTCAGATGAATTTACATGTATTTATCTCCTAGCTCAGATgaatttacatgtatttttctcCTAGCTCAGATGAATTTCCATGTATTTATCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATtaatttacatgtatttttctcCTAGCTCAGATGAATTTACATGTATTTATCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATtaatttacatgtatttttctcCTAGCTCAGATGAATTTACATGTATTTATCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATGAATTTACATGTATTTATCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATTAATTTACATGTATTTATCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATgaatttacatgtatttttctcCTAGCTCAGATGAATTTCCATGTATTTTTCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATGAATTTCCATGTATTTATCTCCTAGCTCAGATGAATATACATGTATTTTTCTCCTAGCTCAGATtaatttacatgtatttttctcCTAGCTCAGATGAATTCCAACAACAAATATTTTGGTTCCTTTCATTTCAGTGGGATGTAGCGGGAGGGAAATAgacgtttatttatttttattttgttttaatgCGTTTTGCTCTCTTTCAGTCCTTTCTGAAATAAAGGTGGGTGTTTGAGAGTTAGGCTTCATCAGTTATGTCACACTGATATAATATTGCATTATTGCACtgacagagatggggagagagatgggacatGGCCACTAACAAACTGAAACACAAACAAATTCCTGTACTTGCCTCTTCCTTTCTTTGTCTGAAAAGAGGAGGATTGAAGGAggatttgattaaaaaaaacaactccTGAACAAGATTTGGACTGAAAAAGCTGGCATTAACATTTCAGCCACAATATAGTCAAATCATTCAATAGCTGTTCTATTTTTTAATTCATgtcatttatttcaatttttttccGCTCCTGGGAATGAATAAACAAGGAGGGAAAATTACGCAATTATGCCATTAAATCAAATGCTTATTTTTTCTTGTCATGGAAATCAAGAGGGCATCTATTGACTTGGTTGAGGAGAGCTGGAATGTGTTTTGTAAATGTGTTGtgtggaagagtgtgtgtgtgtgtctgtctccattCATCCTGCGTCCTCGCTTATTTCAGCAAGATACAAATctattatttttgtttttaaaaatTGTCACTTGTATCAATGCTATGTAATGTTGGGATTTCAAATGAGGTATTATAAGGATCACATTTTTCTGCCAATTTTATTTCACAAATGTTTTGTATTAATCAGAAGCATTAGTCTTTCTCACTCTTTCATACAGGATGTCTCGTCTCCAGGTGTCTCGTCTCCAGGTGTCTCAACATGACTGGACCCTCTCCTTTCTGACCCTCGCTCCTACGGGGGGAGAGCTACAGATGCTTCTTTTAAAAAGACAATTCAATGAATGAACGAACTTAAACAACAGGGAACTTGATGACATGCTCCATGCTGTTTCTTTTCATTTAGTTTGATGAATTGATTGTTATTTTATATCAACTAAAAGATCTCTTTTATTGGGTAAGGTCACATTTTGTGTGGTGTTAACTGTGAACATTCACATTTGAGaagtaaaatttaaaaaaagaaataaaataaatccaCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255701 lncRNA downstream 5320 10944519 ~ 10944813 (-) True G223723
TU255689 lncRNA downstream 29143 10918689 ~ 10920990 (-) True G223717
TU255683 lncRNA downstream 38425 10911271 ~ 10911708 (-) True G223711
TU255682 lncRNA downstream 39637 10910236 ~ 10910496 (-) True G223710
TU255679 lncRNA downstream 47338 10902561 ~ 10902795 (-) True G223707
TU255715 lncRNA upstream 5723 10974219 ~ 10974422 (-) True G223734
TU255909 lncRNA upstream 14411 10982907 ~ 10983190 (-) True G223881
TU255919 lncRNA upstream 26179 10994675 ~ 10995433 (-) True G223886
TU255935 lncRNA upstream 69966 11038462 ~ 11039737 (-) False G223898
TU255936 lncRNA upstream 70250 11038746 ~ 11039229 (-) True G223898
XM_036968666.1 mRNA downstream 8338 10937442 ~ 10941795 (-) True LOC110537203
XM_036968647.1 mRNA downstream 13882 10927995 ~ 10936251 (-) True si:ch211-149k23.9
XM_021589917.2 mRNA downstream 54221 10878709 ~ 10895912 (-) True LOC110508973
XM_036968625.1 mRNA downstream 74004 10865535 ~ 10876129 (-) True LOC110508957
XM_036968608.1 mRNA downstream 84871 10853702 ~ 10865262 (-) True LOC110508966
XM_021589987.2 mRNA upstream 74471 11042967 ~ 11051742 (-) True LOC110509040
LOC110520834 mRNA upstream 83371 11051867 ~ 11054170 (-) True LOC110520834
LOC110520907 mRNA upstream 96993 11065489 ~ 11066973 (-) False LOC110520907
XM_021590011.2 mRNA upstream 100029 11068525 ~ 11079570 (-) False znf628
XM_036968745.1 mRNA upstream 111479 11079975 ~ 11085474 (-) False LOC110509048
TU254793 other downstream 926930 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 926948 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 935241 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 947239 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1266762 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 102450 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 203624 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 307421 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 758866 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 784355 11752851 ~ 11753680 (-) False G224869

Expression Profile