RNA id: XM_036968716.1


Basic Information

Item Value
RNA id XM_036968716.1
length 1821
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110537149
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10982780 ~ 10995885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagcaggaggagggggatagagagaggggaggagacagagagtgagtgaagTGGTGGTCTCTCAGGGAGAGAGAAACGATCTCCTAAAGAGTAGATCACCAGTGAAAGACAATAGTTAGGAACAGAACAGCAGCAGACCAACAGCAGACCTACAAATGGTCAGGAGGGTGTTGAAGTCTACTTAGATGCTGACAAGGACCCAGACAAGCTGAACAGAGACAGACGTTCCCATTTGAGAAAACTCTACAATGACTGCTGCAGCTCAGGAACTGGACGAGCTATGTTTCCTCTCAGCCCAGTCCATGTCCACTCTGGAGACCTCCGACCACTTCCAGATGGTCAAGCTGCTGGGAGAGGGATCCTACGGCAAGGTCATGCTGGCCGTCCACAAGAAGAGAGgCACTCCCATGGCTCTGAAGTTCTTCCCCCGCCAGTCCACATCCCTCTTCTCTTTCCTGCGTGAATACAACCTCTCCCTTTCTTATtgcactcatccctctctcacccgGGCCCTGGGTATCTTCTTCTCCACCCCCTGCTACTACGTCTTCGCCCAGCAGGCTGGTCTCTATGGAGACCTCTACAGTGTCATCGTGTCAGAGgtggGTGTAGATGAAGAGTGTGTCCAGAGTGTGATGTCTCAGCTGAGTGGTGCCGTCTCACACCTCCACTCCATTGGCTTCGTCCACCGGGACATCAAACCAGAGAACATCTTCCTGTGTGACCACACCTGTCGCTGGGTCAAACTGGGTGACTTCGGCCTGGCCCGCCCCACTGGCTGCACTATCCGCGCCGTCTGGTACGACTCACCCTTCTGCACGCCTGAGGTGGAGCAGGCCAAAGAGTCTGAGAAagtgagggagcagagagaggagaatggagaggaggaggagaacatttGGATCACAGTGGAGACCACTATAGACAGCTGGGCCCTGGGCGTGCTGGTCTACTGCCTGCTGACGGGATGCTTTCCCTGGGAAGAGACCACGCACAACGACCCCGCCTACAGGAGGTACAAGGAGTGGTATGAccgcgagacggagagggaggaaaggaacaAGGGACTGAGAGGGGAGCAGGAAGTAATTTGGTGTGAAGGTGAAAGGGAAAAGGACAATATCCTGAGCCTGGAGATGAATCAGAAGTCGAACCCTGTGGCCCCACAGTTTGAAGGCTTCAGCCCACTGTTGATGTCTCTTTTCAGGGAGCTGCTTAACCCACAGCCTAGGCTTCGAGGAGGCCCTGATGAGATCCTCAGCTACCTGGGTGGGCCCTGGTTGattgagacggagagagaggagaagaggaaagcagaggaggtagagaaggaggccAGGAAAATAAGAGAGGCAGGAAcggtggaggaagggagggagagggagggaagaggggagagataaaGTGTTTCATACTAGACAGTTTTGAGAATTTTTAAGATGTACTGTACATTTTGGAAGACAATATTTGCTTTATAGAGGTTGATATTCTGAATATTTTTCTGAACATTTCTTACTCTGTATTGATAGAATTGAGACAACTGTATTTTGATATTGCTGTATGTTTTACCTTGTAATAGTTCTCTACAGTGTAATGCAACttaatataatgtgtgtgtgtgagcgtgcatgtGCCATACCTGCCTGTGTATGTGCGTGCTTGAACATGATCGTGAGTGTGCATGTGGGCTTAGGGGCAGCTAGCCTCTTAAGAGAATACATGAATTAGTTATCCTTCAACACAAAGGCAGTATTATAATGATCACTCTATGACACTTTATGTTGTAAAAATATCTGAATAAACCAGTTTGTATTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255345 lncRNA upstream 32795 10948943 ~ 10950025 (+) True G223433
TU255366 lncRNA upstream 73138 10909452 ~ 10909682 (+) True G223449
TU255361 lncRNA upstream 79294 10903179 ~ 10903526 (+) True G223444
TU255358 lncRNA upstream 81912 10900596 ~ 10900908 (+) True G223441
TU255335 lncRNA upstream 110636 10868327 ~ 10872184 (+) True G223424
TU255739 lncRNA downstream 6245 11002130 ~ 11002335 (+) True G223757
TU255769 lncRNA downstream 76733 11072618 ~ 11077866 (+) True G223775
TU255798 lncRNA downstream 104905 11100790 ~ 11123987 (+) True G223788
TU255835 lncRNA downstream 202540 11198425 ~ 11202897 (+) True G223815
TU255814 lncRNA downstream 279442 11275327 ~ 11278630 (+) True LOC118945782
XM_021623014.2 mRNA upstream 35288 10945625 ~ 10947532 (+) True foxj2
XM_021623027.2 mRNA upstream 38695 10941781 ~ 10944125 (+) True isoc2
XM_036968638.1 mRNA upstream 57102 10913081 ~ 10925718 (+) True LOC110509020
XM_021589928.2 mRNA upstream 104185 10876796 ~ 10878635 (+) False LOC110508993
XM_036968589.1 mRNA upstream 155699 10769638 ~ 10827121 (+) False cacng8b
XM_036968731.1 mRNA downstream 40353 11036238 ~ 11041281 (+) False mfap5
XM_021590033.2 mRNA downstream 171034 11166919 ~ 11174363 (+) False LOC110509074
XM_036968770.1 mRNA downstream 171159 11167044 ~ 11174363 (+) False LOC110509074
XM_036968780.1 mRNA downstream 193073 11188958 ~ 11216832 (+) False LOC110509082
XM_036968776.1 mRNA downstream 193074 11188959 ~ 11216832 (+) True LOC110509082
TU255351 other upstream 30081 10950149 ~ 10952739 (+) True G223434
TU255340 other upstream 104286 10876757 ~ 10878534 (+) True LOC110508993
TU255328 other upstream 126620 10853702 ~ 10856200 (+) False G223418
TU255329 other upstream 126620 10853702 ~ 10856200 (+) True G223418
TU255285 other upstream 155541 10826515 ~ 10827279 (+) True cacng8b
TU255727 other downstream 40392 11036277 ~ 11041260 (+) True mfap5
TU255730 other downstream 45963 11041848 ~ 11043692 (+) True G223748
TU255809 other downstream 171124 11167009 ~ 11174363 (+) True LOC110509074
TU256123 other downstream 395448 11391333 ~ 11391962 (+) True G224035
TU256146 other downstream 437235 11433120 ~ 11436460 (+) True G224052

Expression Profile