RNA id: LOC110520834


Basic Information

Item Value
RNA id LOC110520834
length 610
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110520834
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11051867 ~ 11054170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCAACACATTTGACAGTGTTCTGTTGGCCCAGAATAAGTTTATCTACCACTATAAGAACATGCGCTGGGCCAAGGGCCGACACGAAACCTACCTGTGCATCGTGGTCAAGAGGCGGGTGAGACCAAACTCCCTCTCCTTCGACTTTGGACACCTGCGCAACCGGTCCGGCTGTCTTgttgagCTGCTGTTCCTGTGCCTCATGGAAGCAGGCGCCCTGTGTCCCTGCCTGTGGGCTCCAGACAGTGTGGGACTGTGTTACTCAGTCACCTGGTTCTGTTCCTGGTCCCCCTGCTCAGACTGCTCCTACAGGCTGGCCCAGTTCCTCAGCCAGAACCCCAACCTCCGCCTCAGGATCTACGTCTCCAGGCTCTACTTCTGTGACCCGGAAGACAGCAGTGCGAGAGAGGGTCTCCGCATGCTGCAGAGAGCCGGGGTGCAGATCACTGTCATGAACTATGAAGACTATTTCTACTGTTGTCTACTGTTGGCAGACCTTTGTGGCTTGCAGACAGCGTGTGTTTAAGGCCTGGGACGGACTGCATCAGAACTCTGTTCAACTGGCCAGGAAACTTAACGACATCCTccagCCAACGATAAACAACTAA

Function

GO:

id name namespace
GO:0016444 somatic cell DNA recombination biological_process
GO:0009972 cytidine deamination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K10989 AICDA, AID; activation-induced cytidine deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255935 lncRNA downstream 12130 11038462 ~ 11039737 (-) False G223898
TU255936 lncRNA downstream 12638 11038746 ~ 11039229 (-) True G223898
TU255919 lncRNA downstream 56434 10994675 ~ 10995433 (-) True G223886
TU255909 lncRNA downstream 68677 10982907 ~ 10983190 (-) True G223881
TU255715 lncRNA downstream 77445 10974219 ~ 10974422 (-) True G223734
TU255948 lncRNA upstream 7745 11061915 ~ 11065605 (-) True LOC110520907
TU255957 lncRNA upstream 24557 11078727 ~ 11079533 (-) True znf628
TU255964 lncRNA upstream 35176 11089346 ~ 11089558 (-) True G223919
TU255976 lncRNA upstream 49920 11104090 ~ 11108240 (-) True G223924
TU256005 lncRNA upstream 124285 11178455 ~ 11179883 (-) True G223950
XM_021589987.2 mRNA downstream 125 11042967 ~ 11051742 (-) True LOC110509040
XM_036968682.1 mRNA downstream 83352 10950133 ~ 10968515 (-) True epn1
XM_036968678.1 mRNA downstream 83371 10950133 ~ 10968496 (-) False epn1
LOC110520907 mRNA upstream 11319 11065489 ~ 11066973 (-) False LOC110520907
XM_021590011.2 mRNA upstream 14355 11068525 ~ 11079570 (-) False znf628
XM_036968745.1 mRNA upstream 25805 11079975 ~ 11085474 (-) False LOC110509048
XM_021589998.2 mRNA upstream 25805 11079975 ~ 11087129 (-) True LOC110509048
XM_036968754.1 mRNA upstream 97226 11151396 ~ 11164970 (-) True rasip1
TU254793 other downstream 1028664 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1028682 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1036975 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 1048973 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1368496 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 16776 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 117950 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 221747 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 673192 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 698681 11752851 ~ 11753680 (-) False G224869

Expression Profile