RNA id: TU255948


Basic Information

Item Value
RNA id TU255948
length 1154
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110520907
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11061915 ~ 11066973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATGGAGGAGACAACGAAGGCAATGTGGAAAATAAGACAAAGAAGATATACtaaagggaaatagagagaggaggagggatactatagggaaatagagagaggaggagggatactgtagggaaatagagagaggaggaggagagatactatagggaaatagagagaggaggaggagagatactatagggaaatagagagaggaggagggatactgtagggaaatagagagaggaggaggagagatactatagggaaatagagagaggaggaggagagataagatagggaaatagagagaggaggaggagagatactaaagggaaatagagagaggaggaggaaagatactaaagggaaatagagagaggaggaggagagatactaaagggaaatagagagaggaagaagagagatactatagggaaatagagagaggaggagagatactatagggaaatagagagaggaggaggagagatactataggtaaatagagagaggaggaggaggagagatactaaaGGGAAATAGAGATAGGAGGTGGAagagagatactatagggaaatagagagaggaggaagaggagagatactatagggaaatatcgagaggaggaggaggagagatactatagggaaatagagagaggagtagggatACTAAAGGGaaatagaaagaggaggaggaagaaagatactatagggaaatagagagaggaggaggagagatactatagggaaatagagagaggaggaggaaagatactatagggaaatagagagaggaggaggagagatactatagggaaatagagagaggaggaggagagatactaaagggaaatagagagaggaagaagagagacactatagggaaatagagagaggaggagagatactatagggaaatagagagaggaggaggagagatactataggtaaatagagagaggaggaggagagatactataggtaaatagagagaggaggaggaggagagatactaaaGGGAAATAGagataggaggtggaggagagatactatagggaaatagagagaggaggaagaggagagatactatagggaaatatcgagaggaggaggaagagagatactatagggaaatagagagaggagtagggatactaaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255935 lncRNA downstream 22178 11038462 ~ 11039737 (-) False G223898
TU255936 lncRNA downstream 22686 11038746 ~ 11039229 (-) True G223898
TU255919 lncRNA downstream 66482 10994675 ~ 10995433 (-) True G223886
TU255909 lncRNA downstream 78725 10982907 ~ 10983190 (-) True G223881
TU255715 lncRNA downstream 87493 10974219 ~ 10974422 (-) True G223734
TU255957 lncRNA upstream 13122 11078727 ~ 11079533 (-) True znf628
TU255964 lncRNA upstream 23741 11089346 ~ 11089558 (-) True G223919
TU255976 lncRNA upstream 38485 11104090 ~ 11108240 (-) True G223924
TU256005 lncRNA upstream 112850 11178455 ~ 11179883 (-) True G223950
TU256004 lncRNA upstream 150960 11216565 ~ 11224830 (-) True G223949
LOC110520834 mRNA downstream 7745 11051867 ~ 11054170 (-) True LOC110520834
XM_021589987.2 mRNA downstream 10173 11042967 ~ 11051742 (-) True LOC110509040
XM_036968682.1 mRNA downstream 93400 10950133 ~ 10968515 (-) True epn1
XM_036968678.1 mRNA downstream 93419 10950133 ~ 10968496 (-) False epn1
XM_021590011.2 mRNA upstream 2920 11068525 ~ 11079570 (-) False znf628
XM_036968745.1 mRNA upstream 14370 11079975 ~ 11085474 (-) False LOC110509048
XM_021589998.2 mRNA upstream 14370 11079975 ~ 11087129 (-) True LOC110509048
XM_036968754.1 mRNA upstream 85791 11151396 ~ 11164970 (-) True rasip1
XM_021590085.2 mRNA upstream 293408 11359013 ~ 11363845 (-) True LOC110509113
TU254793 other downstream 1038712 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1038730 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1047023 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 1059021 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 1378544 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 5341 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 106515 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 210312 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 661757 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 687246 11752851 ~ 11753680 (-) False G224869

Expression Profile