RNA id: XM_021589998.2


Basic Information

Item Value
RNA id XM_021589998.2
length 2988
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110509048
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11079975 ~ 11087129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGCCACAGTCAAAAAGCATTTTTAACACTCAGAGAAACACAATAaacaatgagagggagagagagagaaaacaaggtAGATCCACTGTATAAAGGATACAGGACTGGAGATAGACTGATATAAAATTAAACAATGGCCTTTTTAAACTTctgcagtgatagagagaggggggaagagattTAGAGATGGAAAGATAGAAAGAGGTAGATGGACTGATAAATTGGTAGCGGGATGCGACGGAGGAAGTGTAGACTACTGGAGATAGGGACAGGATGGACGAGAGAAAGTGATACagacagaaaaaaaagaagaaaaaacaacggaacattttgaaaaatttgctaagggagacagacagctctggcagggaggggaggaggaaagagggagcgcGTGTGTTTTTATGAATGAATGTCGGTGACTCAGTCGATGTGTCATACAGCCCAGTCTTTATAAAAGGACGTTTAAAACAAGCCTAAACATTTCACTGCGCGAAAATTTGACTTACACACACTCGCATCCCTCCCTAACCAtttgtctgagtgtctgtctatCGTTACTATCAGTTCATTACTAGAACTACACTCAAACTTTACTGAACAAAAAGTTTGGAGGCATtgtattttatttctttattggATAGTTCGCCCTCATTCCTCTACTTTTTCATTCATTCTCTCGTTATTTTCCTTTTCTGCAATCTCTTGCCTCCACTCTTTTCGCGGAGTGTGAAAGCGAGAAGAAACTGGAGCACGTGACAATTTCCGGAGTTCGATTTATTTATAAATTTTCTTACCttgttttttaaaactatttattTATTGTAAGTCGTGCATTTATTTATTGTACACGAACAAATATGAAATTGCTTgtcgactcctcctcctctctgttgctCTCGCTGCTATTGGCCCAGCTTCCTTTATTTACGTCTGCCGTCCCCGCCCCCTACCGGAGGCCGAACGTCGTGCACGAACTGGATAGATTGGCCAATCAGACGAAAAATCTGAGGCAGATCACAGCAGATCTATTGAAGGAACATGCGTTCGAGACAGACCCAGAACAGCATAGATTTAAGTCCCTGCCACTAATGAACAACAGGGCCAGTGACATCAACTCCCTTGAGatgagacccactctctctcagctccacACGGACTTGAAGTCGTTTGAGCACCACTTTGCCTGGTTGAGCAGAGCATCAAGGAAACACCACCACCCTGCTCTCCCTAAACTGGGACAGATGATGTCACTCATCAAGTCTCTCACCAGCATGCTAGAGCATCAGATGATGAGAGTTGATGCTCagcgtctctctcctccctctccctcgatgccgcctccacccccctcccagtTTGATGTGTTACAGTCTTCCCAGGAGCTGCTACTACAGTTCAGACTCTTCTGTGATTGGGCCCAACGAGTGTTCTCAGTGCTCAGTACAAAGTCCAAAATGTCTGCAGTACAATGATGATTCCTGAAGTGCTATAGTCTATAGGGATACACAGAATCCACACTACAACCAATGGGGATCTAATAGCTTCAACCGGCGCTACAAACAATGGTGATTCAAGATAACCACACTACAAACTTGCACTGTTGTCACTGAATGTCCATTCTCATTGTAGCCAATGTGGGAGCTCCATATTCAAACTACAGCCTATGAGGATCCACCGTATTCACACTATTACAACCAGTAATGGTCTTCAATATTCACAAACATGTCACTgccaccccatcctctctctcaaataccttgttcctgactgtgttatttatgtatttatttatttatttacttatttatttgatgtcattatttatttgattttgtaACGTGTCACATATCATTTTTACTTTATTGTTGTGAATTTAATTCCTTGTACCTTGTCAATACTCctattttgttctctctctctcccccttcatccttCTTCCCAAACTAAACAAAGAGACCACACCGTAGCACTTCCTGACTTCTTACAGTCTCTAATGATATGGATTGTATTTTCAactatttaacctgtctctcttTACAAAGAGTAGCCTATTTCCGCCAGTAGATGTAGCAAACATACTTGGCTTGTAGCAAGCATATCTTGGGAGAGCCTACATGTATTTTTCTTACAGTGCTGTACTTTCCCTTGTAGATTTAGGGTTACTCATAGAATCTACTGAACATGTTAAATGTGCCACCTGTTTGGTTTTGTAAACTGTTAAGAAAGAGAATTTTGAACCATGGCTCAATCAGGATGTCAACACAACATAGGAGGGTAGATCGTTTTTCCATGGGTTTAGTTGCTATTTACAGTCACTGTGTCCCACATGGAAAAATAACAGGTGGTATATCTAATGCTGTGGTAAAGGTTTATGAGTATGCACTGATCTAGGACCTGATCTAATCtctttgcacaaatttgttaggATTAGCCTTTTGAGTCAACTGACCCTTACTCTGTGCCTTGGTACACATAATGTTTGAGCGTTTTAGTGACATAAATAAGAAATTAAAAAACACCCCAAGCCTTAAAATACTATGTATTGTGATATTGTGATACTACGGTTCTGCACAGTTGTACAATAATGTAAATTGTTGTATACAATGCAATTGTCTATTATAGTTTTCTATGATATTTAATGTAGAACACTCTGTCAATGCTATCCCTATCGTTTTGTCGCAATATCAATATTATTCTATTCTAGTATTTTGTGACAGTATTTACTATTTATTTAAGTTACTTTGGTGGAACTATTTATTTGCGCTGCAGAGGAGCAAGTCTCCTGTTGTTTTTGTACTTTTATACGGTTTCTATTCATATTTACCATTATCATTGCTTATCATCCATGTTGAAATCATTTTAGTACCATGTGTGAACGCTGTGGAAAACCTTGTGCTTGGGGTTTCCAGCACAGACTGACTGATTGGCCTAAATGTGAAATGTGTGCCTTGAAAAAAAAGTTAATAAAGAACATGCACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255957 lncRNA downstream 442 11078727 ~ 11079533 (-) True znf628
TU255948 lncRNA downstream 14370 11061915 ~ 11065605 (-) True LOC110520907
TU255935 lncRNA downstream 40238 11038462 ~ 11039737 (-) False G223898
TU255936 lncRNA downstream 40746 11038746 ~ 11039229 (-) True G223898
TU255919 lncRNA downstream 84542 10994675 ~ 10995433 (-) True G223886
TU255964 lncRNA upstream 2217 11089346 ~ 11089558 (-) True G223919
TU255976 lncRNA upstream 16961 11104090 ~ 11108240 (-) True G223924
TU256005 lncRNA upstream 91326 11178455 ~ 11179883 (-) True G223950
TU256004 lncRNA upstream 129436 11216565 ~ 11224830 (-) True G223949
TU256047 lncRNA upstream 188788 11275917 ~ 11278628 (-) False G223969
XM_021590011.2 mRNA downstream 405 11068525 ~ 11079570 (-) False znf628
LOC110520907 mRNA downstream 13002 11065489 ~ 11066973 (-) False LOC110520907
LOC110520834 mRNA downstream 25805 11051867 ~ 11054170 (-) True LOC110520834
XM_021589987.2 mRNA downstream 28233 11042967 ~ 11051742 (-) True LOC110509040
XM_036968682.1 mRNA downstream 111460 10950133 ~ 10968515 (-) True epn1
XM_036968754.1 mRNA upstream 64267 11151396 ~ 11164970 (-) True rasip1
XM_021590085.2 mRNA upstream 271884 11359013 ~ 11363845 (-) True LOC110509113
XM_021590107.2 mRNA upstream 278294 11365423 ~ 11368231 (-) True LOC110509134
XM_036968814.1 mRNA upstream 283503 11370632 ~ 11386718 (-) True LOC110510606
XM_021590140.2 mRNA upstream 337664 11424793 ~ 11432989 (-) True styk1b
TU255954 other downstream 6225 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1056772 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1056790 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 1065083 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 1077081 10001415 ~ 10002894 (-) False LOC110508696
TU255996 other upstream 84991 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 188788 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 640233 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 665722 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 665722 11752851 ~ 11753680 (-) False G224869

Expression Profile