RNA id: XM_036968791.1


Basic Information

Item Value
RNA id XM_036968791.1
length 4130
RNA type mRNA
GC content 0.54
exon number 19
gene id ephb6
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11232909 ~ 11308010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccctccctcctccctctctgggtTAGTGTCATTCTGTAGTGGAGATGTGGAgtgtccttctttctctctctctgtttctccagcCTAATTTAGCTGAGGAAGtgatGCTGCTGGACACAACAGAGTCTACCTCGGAGCTTGGCTGGACCACATATCCTGACACTGGGtggGATGAGGTCAGTGTCCTGGATGACCGGGGGAGACTCATCCGGACCTTTGAGGTCTGCAACATCAACCAGAACCCCCGTCTCCAGGACAACTGGCTGGCCACACCCTTCCTCTTCCGCTTCTCGGCACCACGAGTCTTTGTGACGCTGCGTTTCTCCGTGCGGGACTGTGCCAGCCTGCGCTCACCCTCGCCCTCCTGTCGAGAGACACTCACCCTCTACTACAAACAGGCCGACTcacagagagagctggagaggacATGGAATGCAGAGCCGTCCAGTGGAGAGAAGGACACGAGGGAGGGCTGGGTGAAGATTGACACCATAGCAGCAGATAAGAGTTTCACCAAGGTGGAGCCCAGCCTGCCTCACCAGTACCAACCAGACCGCTACCGTCGGGTCAACATCAAGACCCGCAGCTTCGCGCCGCTCACACGCAATGGATTCGTCCTGGCCATCGTCGACAGCGGCGCATGTGTCTCTCTCATGGGTGTGTCCATCTTCTACCGCCGCTGCCCAGCAACCAATCGCTATCTTGCTTCCTATCCGGCCACACCCTCAGGGGCGGAGCCTACCGCCCTGGTCCCTGTGTCTGGGACTTGTGTTCCCCACAGCCAAGCACAGGGAGGCTCCGCCCCTCGCATGCACTGCAACGCAGAAGGTGAATGGATGGTGCCGGTGGGTGGGTGCATCTGTGAAGAGGGATATGAGCCCAATCAAAACAGATCTGCCTGCTTAGaatgTCCAGTGGGGTACTTTAAGTCGGTGTTGGGTTCGGTTCCGTGTTCAGTGTGTCCGTCTAACAGCAGGACCAGTCAGGAGGGAtcgcgtgtgtgtgagtgtcgcAGCGGCTTCTACAGAGCACCAGCCGACGTCAACTCCTCCGCCTGCACaagcTCTCCCTCTGCTCCGACCTCTGTCTCCTGGGAGTATGAGAGTGGTGATGGTGGGGTGTCTCTTCGCTGGCGCCCTCCACTGGACATGGGTGGTCGTAGCGAGGTGTGGTATGGGGTGGTGTGTAGGATCTGTCCCTCGGCCACCTTCACCGCCCCGGGGGCATGCTCCTGGTGTGGAGAGGCGGTCACCTTCACCCCATCCCAGACGGGCATCAAGCAGACCAAGGTCACCCTCAACAACCTGCTCACCAGAGTCACCTACCTTATACAGGTGCAAGCGGTCAATGATGTCTCAGCTCTGAGTCCTTTCCCGCCTCAATTCATCAGCATCAATTTCACTACTAGCCAATCAGtacCCTCTCTGGTCCCTAGCCTGCACCAGTTGAGTCGAGCCCCAGACTCCATCACCCTGTCCTGGCCACAGCCTGACAGACCCAATGGAGACATACTGGAGTACCAGCTCAGATACTATGACAAGggttcAGATGAGGACAGTGCAGTGAGTGTGTTCAGTGAGACCAACACAGTGACCATCAACTCTCTGGCTCCTGGCTCCATCTATGCCTTCCAGATCAGGGCCCGCAACGAGAGGGGTTATGGCCCCTACAGTCATACTGTCTACTTCACTACATTGGCCCTGGAGGAGAGTTCTAAGCAGATCCAGAATCGGCTCCCTCTATTGGTTGGTTCTGTGATGGGCGGGGCAGCCTTCCTCCTGGTCGTTGTGGCGATAGTGGTCGTTTTTGTGTTCCGCAGTAAGAGGAGGGAGAGCCCCTACAGTGACAGACTCCAGAGGTACATCAGCCACAAAGGGGGGGTGAAGTACTACGTAGACCCTTCCACCTATGAGGACCCCAGTGAGGCGGTCAAGGAATTTGCCCGTGAGATCGACCCCTCTCACCTCAAGATAGAAGAGGTGATTGGTGCAGCCCAGTTTGGGGAGGTGTCTCGGGGGCGCTACCGGCCCCTGGGTCGTAGGGAGGTGCTGGTGGCGGTGAAGACGCTGCGCTGGGgcgtgacagacagagagaaggcaGTGTTTATGACCGAGGCGGGGGTGCTGGGACAGTTTGACCACCCCAACGTGCTGAAGCTGGAAGGGGTGGTCACCCACAGCCCACCAGAGAGGATCATCACTGAGTTCATGGAGAATGGACCACTGGATGCCTTCCTCAGGGAGAATGAGGACCAGTTCAGTGTTCTCCAGCTTGTAGGGATGGTGAGGGGTGTTGGGGCTGGGATGAGGTACCTCTCTGAGAGGAACTTTGTCCACCGGGACCTGGCTGCCAGGAACGTGCTGGTCAACTCTAACCTGGTGtgtaaggtgtctgactttgggCTGTCGCGGCTCATGAGGGGCCTGGACCATAACATGCCCACCTACACTGCCTCACTGggcaGTAAGATTCCTGTCAGGTGGACAGCCCCGGAGGCCTTCCAGCATCGCAAGTTCAGCTCAGCTAGTGATGTCTGGAGCTTCGGAGTGCTCATGTGGGAAGTGATGTCATATGGCGAGCGGCCATACTGGGACATGAGCAATCAGGAAGTAATGAAGGCAGTAGCAGACCAGTACCGTCTCCCAGCCCCCCATAACTGTCCTCCAGCTCTCCACTCCTTGATGCTGCAGTGTTGGCAGGCTGAGAGGGGCGACCGGCTAGGCTTcgactccctcctctcctctctggacaGGCTCATACGACACCCTGCCTCCCTCAAGGCAGAGCAACCCCGCTCCACCCAGCCACTGCTGAGCCCCACCCCCACAGACCTGTCGTCGGTGGCGACGGTCAGTGAGTGGCTGACAGCATTAAGGATGGACAGGTATAAGGACCAGTTTGAGAGGGCACATTTGGACACACTGGACCGAGTCAGCAGGCTAACCATAGAggATGTGCAGAACCTGGGGGTGAACCTGTTGGGACACCAGAGGAAAATCACCAATGCGGCCCAGCAGCTCAGAACCCACCTCACCCAGGGCCAGGTGGAGGTCTAGAACCCACCAATCACCTGAGAGCTTCACAGGAAGTAACAGAGGTGCACTATTGAAGCTGTAGTCCAAGGCAAAGCGAGATCTGGGAGGAGAGTTGCTAAGAAGGAACAGGGAGATTTGAGGGAGAAAAGTCTGTGTTATTTCACTTGTTTGCTGTTTACATTCTCTTTCTCTTTGCcggtctctacctctctttctctcactcctcccAAATTGTCTCACTACTGTCCCTCTTTCACTCGTAAGTTTCACTACCCTTAGTAAATTAAAACAGTGAAAATGAGTTTTTTACCCGAACACAGGGATCTCCCGTCACAAGCAATTGCATAGACAATCAAATACTGTTTTTGCTGAttaatgttgatatcatgaacATTGTTCATGATTATTTGTTAAGTTACACCTCTTTACTGAAATCAGAAAATGCCAACCCCTGTTGACTAAACATTAGCCAATGGTTTCTCCCATCGGTCACTAGCCTGGTCACATCTGGGGATTCCATTAGACTCAAGAAATGGGGGTGTAGTTCATGTTGTGACAGAATGGAGTCACCCACCATTGAGCAGCACCCTCCTCTGTGTATATTTCAGTTCACACTCCTTTTTTTGAATAGATAAAGTCACTGGGTCATTTGAGCATTGTGAATGTGAAATGGTTTAACTGGACTATGTGATCTGATTGCCCATTGAAGTAAGGAAGGTGATGTTATGCTTCGTGAGTgttctgtgtctgtttgtgttcatgtatgtatgtatgtatgttgtatGAGGAGTGGTGTCCACACTCCCAGGGTTCGGGAGGAACGTCCCTCCCCGGTGAAAGCCTCAGATAAGGTGTGTTCGACTCCTTTGATAGCCCACAGATGGTCAGCCATCCAAAGAGTGTCATAAATTGGAATTTTGTCATCACTCTGGACCTCGGCGCCTACAAGTCTCCAGTAATGAGTTTCACCTTCTCtcattcttgtgtgtgtgtatgagtgtatcCACATGAGTAAGTATGTTAATTTGTATTTGTTCACCACTATTCCACTATTGTGCAAATTTGTAAAATAAAGAATATGATTTTATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255835 lncRNA upstream 30014 11198425 ~ 11202897 (+) True G223815
TU255798 lncRNA upstream 108924 11100790 ~ 11123987 (+) True G223788
TU255769 lncRNA upstream 155045 11072618 ~ 11077866 (+) True G223775
TU255739 lncRNA upstream 230576 11002130 ~ 11002335 (+) True G223757
TU255734 lncRNA upstream 243637 10989075 ~ 10989274 (+) True G223752
TU256115 lncRNA downstream 38692 11346702 ~ 11353026 (+) True G224027
TU256104 lncRNA downstream 51012 11359022 ~ 11360798 (+) False G224017
TU256105 lncRNA downstream 51012 11359022 ~ 11363657 (+) True G224017
TU256099 lncRNA downstream 57415 11365425 ~ 11365941 (+) False G224016
TU256100 lncRNA downstream 57415 11365425 ~ 11368219 (+) True G224016
XM_036968780.1 mRNA upstream 16079 11188958 ~ 11216832 (+) False LOC110509082
XM_036968776.1 mRNA upstream 16079 11188959 ~ 11216832 (+) True LOC110509082
XM_021590033.2 mRNA upstream 58548 11166919 ~ 11174363 (+) False LOC110509074
XM_036968770.1 mRNA upstream 58548 11167044 ~ 11174363 (+) False LOC110509074
XM_036968731.1 mRNA upstream 191630 11036238 ~ 11041281 (+) False mfap5
XM_036968807.1 mRNA downstream 16040 11324050 ~ 11332316 (+) False trpv6
XM_036968802.1 mRNA downstream 16040 11324050 ~ 11338618 (+) True trpv6
XM_036963852.1 mRNA downstream 32296 11340306 ~ 11346518 (+) True LOC110520909
XM_021590118.2 mRNA downstream 91010 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA downstream 91835 11399845 ~ 11406578 (+) True m6pr
TU255809 other upstream 58548 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 189219 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 191651 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 237496 10994058 ~ 10995415 (+) True LOC110537149
TU255351 other upstream 280172 10950149 ~ 10952739 (+) True G223434
TU256123 other downstream 83323 11391333 ~ 11391962 (+) True G224035
TU256146 other downstream 125110 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 272772 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 480519 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 706498 12014508 ~ 12014805 (+) True LOC110537447

Expression Profile