RNA id: XM_036968807.1


Basic Information

Item Value
RNA id XM_036968807.1
length 3379
RNA type mRNA
GC content 0.46
exon number 16
gene id trpv6
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11324050 ~ 11338618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCCCACCTGTGAATCCTCCTTCTGTTTCTCAAATCAGCTTGGTGTCACATGTTGTCGTAGTACCTGATTGTCAATTAGGAGTAAAGGACTAACTGTTTTCTTTCATAAAGCCGTTTCAAATAGACTCACCCTATGAGAGGATGGCCCCGCCCCTGGCAAGATCTGCTCCAGGTGAACTCAACCATTGGTGGAGCCAGCTCAGGTTCCGCCTCCAGAACAGGAAGGGGTGGAACGAGATGCTTGATGAAACATTTTTGCTGCAGAACAAAAGGACAAATGACATCCCTCTCTTCTTTGCGGCCAAAGAGAACAGTGCAGGTTGCATTAAGAAACTTCTGGACTGTGCATCCACTAACATCTTTGAGAGAGGTGCTCTGGGGGAGACAGCGCTGCATGTGGCAGTACTGAATGATAACATGGATGCTGCCATAGCTCTGATGGACGGAGCACCTGAACTCATCAATGAgcccatgacctctgacctcttccTTGGCATGACACCTCTccacattgctgtggtgaatcaGAACTTTAACCTGGTCCGCAGTCTGATTGGTAAAGGGGCGGATGTGGCCACGCCCAGAGTCACAGGCCTGTACttcaggaagagaagaggagggctgCTCTACTATGGTGAGCACATCCTGGCATTTGCGGCCTGTGTGGGAAATCAGGACATAATCTCCATGGTGATCAACGCAGGAGCCAGCACCAGGGCCCAGGACTCCATTGGTAACACAGTGCTCCATATTCTGGTCCTGCAGCCCAATAAGACTTTAGCATGCCTGGCGTTGGATCTGTTGTTGGCACATGACGTTGAGCTGGACCAGACTGTGCCACTGGACATGGTGCCCAACTATCGTGGCTTAACGCCCTTCAAACTGGCTGCCAAGGAGGGCAACCTTGTGgCCTTCCAGCACCTGGTCAACCGGAGGCGAGTCGTCCAGTGGGACCTGGGAccactgacctctaacctctatgaCCTCTCAGAGATCGACTCCTTGGTCGCCGACGACGACCTCTCTGTGCTGGAGCTCATCGTGGGCAGCCAGAGGAGAGAGGCAAGAAGGATACTGGAAGTGACTCCTGTTAGGCAATTGGTCAGTCTCAAGTGGAATCTCTATGGAAAACACTACTTTAGattgttgctgctgctgtaccTCCTGTACATTGGGACCTTCACACTGTGTTGTGTGTATCGCCCTCTAAAGGACGCTCCAGAGAATTACACTGTATCTGACATGGACAAAACCATCCGCGTGCAGAAAACTCTGAAGGAGAGTTATGTGACCTATGGGGACAACTTGCGTCTGGCAGGAGAGATGATCAGTGTCCTGGGTGCCCTGGTTATTCTGCTACTGGAGATCCCAGATATGCTGAGAGTGGGGGCCAAGCAGTACTTTGGACAGACGGCCCTGGGGGGACCCTTCCATGTCATTCTTATTGCCTATGCGTTCCTGGTggtgctgctgtgtgtgttcagggtcaGTGGGGTGCAGGGGGAGGCAGTTGTCATGGCTGTGTGTCTGGTGCTGGGCTGGAGCAATGTCATGTTCTTCGCCCGAGGCTTTCAGATGCTGGGACCTTATGTCATCATGATACAGAAGATTATATTTGGAGACCTGACCAAGTTTATGTGGCTGAGCTTCATCGTGCTCATGGGGTTTTCCACCTccctGTGGATGGTGTACATGACTCAGGACCCAGACTCTCTACCTGCGTACCGCTCCTTCCCCATCACTCTGTTCTCCCAGTTTGAGCTGAGTGTGGGTCTGATAGACCTGCCAGTGGACCACACTATCACAACGCCCCCTATTGTCCATGTGCTGCACTGCACCTTCTCTGTGGTCTCCTACATACTGCTGCTCAACCTTCTCATAGCCATGATGAGTGATACACACTGGAGAGTTGCCCAGGAGAGGGACGAGCTCTGGAGGACACAGGTGGTGGCCACTACCCTGATGTTGGAGAGGAGGTTGCCCCGCTGCCTGTGGCCCCGGCTGGGGGTGTGTGGACTGCTCTACGGCCTGGGGGAGCGGTGGTACCTCCGGGTTGAGGATCGCAATGACCCACTGGTGCAAAAGATGCGTCGCTACGTGCAAGCCTTCTCTAAGGATGAGGACCAGAGCAAGGAGcgggaggagatggagaacacTGACATGTCAAAAGGACCTGGAAGCCCTCTGATCAGACCCAAACACAGGGGTGGGATAgatggaaacaggaagtcccTGGCATGCTGGCAGATGATTCGCCACAGCGCTCTGGGTTTAGATGTGGAACAGGAAGAGCCTGAGGATGACCAGGAAGTAAGATACGTCTGAGGGTTAAGACAGCAAAACAGATCATTATATTGTTATCATATAATATATGTGTGATGCAATTATGTATGTATGCAGTATTATTTGTCGAAAACAAATGATTGTATTGTAGTAGCTAGTGTATATGGGCAAGACTGGGTTGAAATGTAGACTCGATTCATTTTCAGTGTTTTTGGACCATGTATGTCACTTCCAAGTAAAGCACgtcaatatttttttattacagATTTTACAAGACAGTATATTAAACTTAATTTTTTACTGGAAACCTTTTTTTTCAGGATTGTAAATCCAAACAGAAAACCAAATGATTGGTTAATGCACATAATCATGTAGATCATTATTAAAGTCATTAAAAAAATATCTCACCAAAACAAGCAAATAAGTGCAAGATATTATTCATCTTTTACATTAGTGCAGATTCTAACTGAAACTGGCAGGCTGACTTGATTGTTCTTCACACGGCATAACTAACTATAATGTGATTTTATTTACCATCATTGGTTATGCCTGGATGTCTAATGAATTATAACATAGAATTAGGTCATACAGTGTATAATAATGGTTTAAAAAGGCTATTGATAGAGATGTGTAATCGTGGTTTAAAAAGGCTATTGATAGAGATGTGTAATCGTGGTTTAAAAAGGCTATTGATAGAGATGTGTAATCGTGGTTTAAAAGGCTATTGATAGAGATGTGTAATCGTGGTTTAAAAAGGCTATTGATAGAGATGTGTAATCGTGGTTTAAAAAGGCTATTGATAGAGATGTGTAATCGTGGTTTAAAAAGGCTATTGATAGAGATATGTAATCATGGTTTTAAAAGGATATTGATAGAGATGTGTAATCGTGGTTTAAAAAGGCTATTGATAGAGATATGTAATCATGGTTTAAAAAGGATATTGATAGAGATATGTAATCATAGTttaaggggctcttttccaagtttaaaatgaaaaacattcaacattggccatgctgtcaatgaagcctGATTTCAATTGAttaacaactgttaactcggaggCAGGAATAAATGAGCTCTGattgggaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255814 lncRNA upstream 45420 11275327 ~ 11278630 (+) True LOC118945782
TU255835 lncRNA upstream 121153 11198425 ~ 11202897 (+) True G223815
TU255798 lncRNA upstream 200063 11100790 ~ 11123987 (+) True G223788
TU255769 lncRNA upstream 246184 11072618 ~ 11077866 (+) True G223775
TU255739 lncRNA upstream 321715 11002130 ~ 11002335 (+) True G223757
TU256115 lncRNA downstream 14386 11346702 ~ 11353026 (+) True G224027
TU256104 lncRNA downstream 26706 11359022 ~ 11360798 (+) False G224017
TU256105 lncRNA downstream 26706 11359022 ~ 11363657 (+) True G224017
TU256099 lncRNA downstream 33109 11365425 ~ 11365941 (+) False G224016
TU256100 lncRNA downstream 33109 11365425 ~ 11368219 (+) True G224016
XM_036968793.1 mRNA upstream 16040 11232909 ~ 11308010 (+) False ephb6
XM_036968791.1 mRNA upstream 16040 11232911 ~ 11308010 (+) True ephb6
XR_005040884.1 mRNA upstream 45416 11275180 ~ 11278634 (+) False LOC118945782
LOC110509096 mRNA upstream 55510 11261193 ~ 11268540 (+) True LOC110509096
XM_036968780.1 mRNA upstream 107218 11188958 ~ 11216832 (+) False LOC110509082
XM_036963852.1 mRNA downstream 7990 11340306 ~ 11346518 (+) True LOC110520909
XM_021590118.2 mRNA downstream 66704 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA downstream 67529 11399845 ~ 11406578 (+) True m6pr
XM_021590127.2 mRNA downstream 79072 11411388 ~ 11420807 (+) True LOC110509154
XM_021590200.2 mRNA downstream 136458 11468774 ~ 11476776 (+) False LOC110509281
TU255809 other upstream 149687 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 280358 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 282790 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 328635 10994058 ~ 10995415 (+) True LOC110537149
TU255351 other upstream 371311 10950149 ~ 10952739 (+) True G223434
TU256123 other downstream 59017 11391333 ~ 11391962 (+) True G224035
TU256146 other downstream 100804 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 248466 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 456213 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 682192 12014508 ~ 12014805 (+) True LOC110537447

Expression Profile