RNA id: XM_036963852.1


Basic Information

Item Value
RNA id XM_036963852.1
length 2140
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC110520909
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11340306 ~ 11346518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtaccgcaccgggctatgcctgcacACCAGGGACACCGTGCACCtcacctcacgGACAAATGACATCCCTCTCTTCTTTGCTGCCAAAGAGAACAGTGCAGGTTGCATTAAGAAACTTCTGGACTGTGCATCCACTAACATCTTTGAGAGAGGTGCTCTGGGGGAGACAGCGCTGCATGTGGCAGTTCTGAATGATAACATGGATGCTGCCATAGCTCTGATGGACGGAGCACCTGAACTCATCAATGAgcccatgacctctgacctcttccTTGGCATGACACCTCTccacattgctgtggtgaatcaGAACATTAACCTGGTCCACAGTCTGATTGGTAAAGGGGCAGATGTGGCCACGCCCAGAGTCACAGGCCTGTACttcaggaagagaagaggagggctgCTCTACTATGGTGAGCACATCCTGGCATTTGCGGCCTGTGTGGGAAATCAGGACATCATCTCCATGGTGATCAACGCAGGAGCCAGCACCAGGGTCCAGGACTCCATTGGTAACACAGTGCTCCATATTCTGGTCCTGCAGCCCAATAAGACTTTAGCATGCCTGGCATTGGATCTGTTGTTGGCACATGACGTTGAGCTGGACCAGACTGTGCCACTAGACATGGTGCCCAACTATCGTGGCTTAACGCCCTTCAAACTGGCTGCCAAGGAGGGCAACCTTGTGGCCTTCCAGCACCTGGTCAACCGGAGGCGAGTCGTCCAGTGGAACCTGGGAccactgacctctaacctctatgaCCTCTCAGAGATCGACTCCTTGGTCGCCGACGACGACCTCTCTGTGCTGGAGCTCATCATAGGCAGCCAGAGGAGAGAGGCAAGAAGGATACTGGAAGTGACTCCTGTTAGGCAACTGGTCAGTCTCAAGTGGAATCTCTATGGAAAACACTACTTTAGattgttgctgctgctgtaccTCCTGTACATTGGGACCTTCACACTGTGTTGTGTGTATCGCCCTCTAAAGGACGCTCCAGAGAATTACACTGTATCTGACATGGACAAAACCATCCGCGTGCAGAAAACTCTGAAGGAGAGTTATGTGACCTATGGGGACAACTTGCGTCTGGCAGGAGAGATGATCAGTGTCCTGGGTGCCCTGGTTATTCTGCTACTGGAGGTCCCAGATATGCTGAGAGTGGGGGCCAAGCAGTACTTTGGACAGACGGCTCTGGGGGGACCCTTCCATGTCATTCTTATTGCCTATGCGTTCCTGGTggtgctgctgtgtgtgttcagggtcaGTGGGGTCCAGGGGGAGGCAGTTGTCATGGCTGTGTGTCTGGTGCTGGGCTCGAGCAATGTCATGTTCTTCGCCCGAGGCTTTCAGATGCTGGGGCCTTACGTCATCATGATACAGAAGATTATATTTGGAGACCTGACCAAGTTCATGTGGCTGAGCTTCATCGTGCTCGccctGTGGATGGTGTACATGACTCAGAACCCAGATTCTCTACCTGCGTACCGCTCCTTCCCCATCACTCTGTTCTCCCAGTTTGAGCTGAGTGTGGGTCTGATAGACCTGCCAGTGGTCCACACCATCACAACGCCCCCTATTGTCCATGTGCTGCACTGCACCTTCTCTGTGGTCTGCATGCTGCTGCTCAACCTGCTCACAGCCATGATGATTGATACACAACGGAGAGTTGCCCAGGAGAGGGATGAGCTCTGGAGGATACAGGTGGTGGCCACTACCCTGATGTTGGAGAGGAGGTTGCCCCGCTGCCTGTGGCCCCGGCTGGGGATGTGTGGACTGCTCTACGGCCTGGGGGAGCGTTGGTACCTCCGGGTTGAGGATCGCAACGACCCACTGGTGCAAAAGATGCGTCGCTACGTGCAAGCCTTCTCTAAGGATGAGGACCAGAGCAAGGAGcgggaggagatggagaacacTGACACGTCAAAAGGACCTGGAAACCTGCCATTCTGGCAGATGATTCACCTCAACTCTCTGGGTTTAGACATGGAACAGGAAGAGGATGACCAGGAAGTAAGATAGATCTGAGGTTTAAGACAGTAAAACAGATcattatattgttattatataatgtatgtgtgatgcaagtgtcatgacgttggcctctttgggtatagcaagctccatccccctc

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255814 lncRNA upstream 61676 11275327 ~ 11278630 (+) True LOC118945782
TU255835 lncRNA upstream 137409 11198425 ~ 11202897 (+) True G223815
TU255798 lncRNA upstream 216319 11100790 ~ 11123987 (+) True G223788
TU255769 lncRNA upstream 262440 11072618 ~ 11077866 (+) True G223775
TU255739 lncRNA upstream 337971 11002130 ~ 11002335 (+) True G223757
TU256115 lncRNA downstream 184 11346702 ~ 11353026 (+) True G224027
TU256104 lncRNA downstream 12504 11359022 ~ 11360798 (+) False G224017
TU256105 lncRNA downstream 12504 11359022 ~ 11363657 (+) True G224017
TU256099 lncRNA downstream 18907 11365425 ~ 11365941 (+) False G224016
TU256100 lncRNA downstream 18907 11365425 ~ 11368219 (+) True G224016
XM_036968802.1 mRNA upstream 1688 11324050 ~ 11338618 (+) True trpv6
XM_036968807.1 mRNA upstream 7990 11324050 ~ 11332316 (+) False trpv6
XM_036968793.1 mRNA upstream 32296 11232909 ~ 11308010 (+) False ephb6
XM_036968791.1 mRNA upstream 32296 11232911 ~ 11308010 (+) True ephb6
XR_005040884.1 mRNA upstream 61672 11275180 ~ 11278634 (+) False LOC118945782
XM_021590118.2 mRNA downstream 52502 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA downstream 53327 11399845 ~ 11406578 (+) True m6pr
XM_021590127.2 mRNA downstream 64870 11411388 ~ 11420807 (+) True LOC110509154
XM_021590200.2 mRNA downstream 122256 11468774 ~ 11476776 (+) False LOC110509281
XM_021590206.2 mRNA downstream 122256 11468774 ~ 11476776 (+) False LOC110509281
TU255809 other upstream 165943 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 296614 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 299046 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 344891 10994058 ~ 10995415 (+) True LOC110537149
TU255351 other upstream 387567 10950149 ~ 10952739 (+) True G223434
TU256123 other downstream 44815 11391333 ~ 11391962 (+) True G224035
TU256146 other downstream 86602 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 234264 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 442011 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 667990 12014508 ~ 12014805 (+) True LOC110537447

Expression Profile