RNA id: XM_021590085.2


Basic Information

Item Value
RNA id XM_021590085.2
length 1730
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110509113
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11359013 ~ 11363845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTGGCTGAATGGACATCTCTCCAAGGACTAGATATCTCTCCAAGGACTAGATATCTCTCCAAGGACTAGATATCTCTCCAGACAGTTGTTCAGAACTCTGTCTCTtatcacacacacagcagagataGAGAGTAGAAGCAGCAGCAAACGGATTTTGGGACAGACTGAGTATTGTGTTACAGGAATTAATTATAAATCTAAAAGGGGCACGTTGCTatagagacggagagggaggttTTTTAAAACCACAGTGCATTTAGCCTTCACAGTACTTTACAGTCGCAGTCGGTGGGTCAGGAACAGCAGCAATGTATATCAAGTTTTGCCGTATTGTAGGAAGTGGAGGGAATGTCAAATTACCAGATGAGGCAAACGCAAAGTTTTCGGTTGAAGTGAAGAAGCAGCAAGGGAAAGACCTGCAGGTCCTGGGGAACGTTGGTCTGTACCGCGCAGTGTGTTTACTACTGTCTGTCATCTGTCTGGTTCTACTGCTCGTCATCATCATCCTCTGTGTCAAATTTCCATTCCAGCCTCAAGTCTGTCATGGTACTGAAAAAGGGATTGAGGCTAAAGAGAAGGGGAGTGTGACTGAAAAAGGGATTGAGGCTAAAGAGGAGAGGTTCCAGTCCACTGAGGTGTGCAGCCTGCAGACATGCCAAGCACAATACTTCCAACAACAGAGCCAGGtCCCTGCCTGCCACATGTGTGATGAAGGCTGGCTGCACTTTGAGAGCTCCTGCTACTTCCTCTCCAGAGACAGAATGAACTGGGACGAGAGCAGGGACGAGTGTAAGAAGAGAGGGGCAGATCTGGCTGTCATAACAAACAAAACAGTGCAGACCTTTCTAACGAAGAAGGGGAACCTGATGTACTGGATCGGCCTGAGACAGAGAACCAGGAACTGGGTTTGGGTCAACAACACTGCACTGGGACAAAGTTACTGGTCAGGATCCAACAGACAAGGGGATTGTGGGTTACTGACAGGAAGGGATCCTCCTGAGAGAAGCTGGAGCTCCACATCATGTGACCAGTACAGCTTCTACATCTGCCAGAGGGGGCGCTAAAGGACAGACTTCACCATCTGCCAGcagtcaccaaccctggtcctggagagctatACGATgtacaggcttttgttccagcccagcagtaAGACACATGATTTAGCTAGTCAATGAATCACCTTGATTAGCTGAATCATTTAAGTGTTGTACACCATGTAGGTCAGCAGGGTTGGTGGCCACTGCCATATTCCAACTAAGAAACCTGTCAATACGGATTCTCTTTTGACTTCTATCATTCAGTCCTATTCCATAGCCTTTTATCCCATGATTACACATCTCTATCAACAGCCTTTTAAACCTTGATTATACACTGTATGACCTAAGTCTATGTTATAATTCATTAGACATCCAGGTATAACCAATGATGGTAAATATAATCACATTACAGTTAGTTATGCCTTGTGAAGAACAATCAAGTTGGCCTGCCAGTTTCTGTTAGAGTTTGCACTAATGTAAAAGATTAACACTGTATATTGCACTCATTTGCTTGTTCTGCTGAGATGTTTTCTATATGTGTTCTCAATGCCTTTGAATGTGATAATGACCTACATGATTATGTGCATTAACCAATCATTATGTTTTAAGTACTGATTCACAATCCTGAAAGAAACAAACGTTTAATATCATTTGTCCCTGTAATAAAGAATCAGTTATTATACTGTC

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256882 lncRNA downstream 597 11358172 ~ 11358416 (-) True G224679
TU256879 lncRNA downstream 5987 11346661 ~ 11353026 (-) True G224676
TU256047 lncRNA downstream 80385 11275917 ~ 11278628 (-) False G223969
TU256048 lncRNA downstream 80385 11275917 ~ 11278628 (-) True G223969
TU256004 lncRNA downstream 134183 11216565 ~ 11224830 (-) True G223949
TU256897 lncRNA upstream 27178 11391023 ~ 11392426 (-) False G224692
TU256899 lncRNA upstream 27178 11391023 ~ 11392022 (-) False G224692
TU256902 lncRNA upstream 27320 11391165 ~ 11392022 (-) True G224692
TU256903 lncRNA upstream 28769 11392614 ~ 11393104 (-) True G224693
TU256910 lncRNA upstream 43755 11407600 ~ 11407909 (-) True G224699
XM_036968754.1 mRNA downstream 194043 11151396 ~ 11164970 (-) True rasip1
XM_021589998.2 mRNA downstream 271884 11079975 ~ 11087129 (-) True LOC110509048
XM_036968745.1 mRNA downstream 273539 11079975 ~ 11085474 (-) False LOC110509048
XM_021590011.2 mRNA downstream 279443 11068525 ~ 11079570 (-) False znf628
LOC110520907 mRNA downstream 292040 11065489 ~ 11066973 (-) False LOC110520907
XM_021590107.2 mRNA upstream 1578 11365423 ~ 11368231 (-) True LOC110509134
XM_036968814.1 mRNA upstream 6787 11370632 ~ 11386718 (-) True LOC110510606
XM_021590140.2 mRNA upstream 60948 11424793 ~ 11432989 (-) True styk1b
XM_021590196.2 mRNA upstream 69273 11433118 ~ 11436182 (-) False LOC110509171
XM_021590151.2 mRNA upstream 69273 11433118 ~ 11436222 (-) False LOC110509171
TU256045 other downstream 80385 11275917 ~ 11278628 (-) False G223969
TU255996 other downstream 184646 11172120 ~ 11174367 (-) True G223942
TU255954 other downstream 285263 11070946 ~ 11073750 (-) False znf628
TU254793 other downstream 1335810 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 1335828 10020648 ~ 10023185 (-) True LOC110508724
TU257101 other upstream 363517 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 389006 11752851 ~ 11753680 (-) False G224869
TU257114 other upstream 389006 11752851 ~ 11753680 (-) False G224869
TU257115 other upstream 389006 11752851 ~ 11753680 (-) True G224869
TU257122 other upstream 432045 11795890 ~ 11796309 (-) True G224873

Expression Profile