RNA id: XM_036968846.1


Basic Information

Item Value
RNA id XM_036968846.1
length 3140
RNA type mRNA
GC content 0.42
exon number 7
gene id m6pr
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11399020 ~ 11406578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatccccgagctgacatgGTGTCCatgtcccccccacacacagcgaCGTCTGTGCGGCTGTTAGTTCTGGCTGTTCAGCTGGTCCTGTTGGTGTGTGGAAGCCAGGCCCGTGACGACACCAAGAGGTGTAAGCTGTTCTCTGAGTCCCCGACAGAACGGAAGGTCCTCAGTCTTCTAGAACCACTCACTAACAAGAATTTCTCTGTGGCGACGACAAGCGGCAAGGAGAGCTACACGTACCAGTTCCAGGTGTGTGGGGATGCGGGGAAAATGGTAGGAGCGGGACTCGTTCAGATCGACCATACGGAAAAAGAAAGTGAGACAGTGCTTGGCCTGTACACTGCAACACAGGCTATCGGAGGAAGTGACTGGGTGATGTTGATCTACAGCAACGGCACCAAGTATGACGGCCACTGTTCCAAGGAGATGAGGAAAGCCATTGTCATGATCTCCTGCAACAGAGGAGTGGaaatgGGGaagctggaagtggtgttggaggagagggagagggacagggactgTTTCTATCTGTTTGAACTGGACTCCAGTGCGGTCTGTCCCGCTCTGCCATCTCAGCTCAGTGCAGGCTCCATAATACTCATCATTGGGTTCGTCCTCTTGTCAGTGTACCTCATTTGTGGATTCCTCTACCAGCGTTTGATTGTCGGGGCCAAAGGGTTGCAGCAGTTCCCCAACTATGTCTTCTGGACGCAGGTTGGCAACCTGGCAGCGgATGGATGTAATTTTGTGTGTAGGACACAGGGCCCCGAAGAGGAACCTCCCACATACAGGGGTGTGTCCACAGAGCCAGAGGAGCAAccagaagagagggatgaccacTTGCTTCCCATGTGATCTGATGTCAGTAGTGGGAGGGATCTATCCCGTGTGAAGCTTTTGATACTTCGGATAGATATTgcccttaggcacagatctagggtcaTCACTTACTCTCTCCAAGTCTGGAGAAACATAAAACTGACCTCAGTTCAGTGTCTAGGTGCAACTTCATCCTAGTTCATTTTGACAGTTTCAGGGATGAGTTTAGAGGTGGGCACACTAGTTTATGGAAGGCTGGAGGATCTAAGTGTTTAGGATCTACTCCTAAACACTTAGTTTGTTATATTAGATGGTAAGTCACCTGCCCTGGTTTGCATGGCCCAGGAGTCATTATTTGGAGGTGGCAACAAAAACCTGGAtacacttttcttttttttcctttcATGAACTGGAGTGGCCACCTCTGGATGGAGAGTGACGTCTCAGACTCTGTTACATCTGGTTCATCTGGCACAATAGGTGTCGTTACTAGTTAACACTGCCACAAAGTCATGAAACCCgtctatttctacaatttaaaatctgatttttaaACCTAACTAACCTTAGCCACACTGATAACCTGATGCCTAAGCCTGACTTTTAAATTAAATTTCATTAATTTTCATGATagagccaattttgactttgtggctgtctAATCTAGTGGAAACCGTAAGGCCTTTCTGACGTGTTAGTGCTGACACAATGCAACCATAGAAGCTGTTCCTAACATGTGACTCCCATCCAGTTTGTTTCAGTAGCTGATGGCTGTGTACTGACTCgtaggtcacactttatttgaagGTCTGCTTATACACTGCTTAGAATAATTTTTACATGGTAATATTACAGTAAGTGAATACGCAGGCTTTTGTTCATGATGTATATGCTTACAGGTCATTGTAATTAAATGGTTtatacatttaaaatggttagcTATATTTACGATTGTTAAGAAATAATAAACACTCTTAGCCTAAAGTTTTCGACTGGGTAAAAATATGTAATAACGACCTTCAAATGAAGTTGTACCACAATATAGTACAGAGCCATTTCATCCAATGCACTGCTAGACACACATTTAGTCCGTATTGCTGTTTTAGAGTAGGATGCTGACTGGGCCTTGACCAAAATGTACTTTTGACCCGTTCTACCTTTTCCTTAGCTATTTGAAGAGTAGGGTTGGAACCAATTCCATTTTAATTCTGTTCCCATCAGTTCACTTCCTATGTTGACAAAATTGAAAATGCATTGACCCAAACCATGGTACTGAGTAGTAGCCTACTGTTATGCtgtgttcataaccaagtgggaaggtggtaatTACCAGTTGTGAAGTTGTTAATACTAGTTGGATGCATTTTACGTTCTTTGAAATCGTTGAGAAACActgattggctaatggccaacaagcaGCGTCGACTGTAAATTAAAAGTACAGCTTTCACACttgtaaacaaattatagtgTTAAAAAAACATATTAATGGATTTTTATAAATGATGTTTTGTTGCATTTAACAGCCAAAATATGCTGTTATCGAGGTAATTTTCTTATAGGTGATGTCAGAGGTCACCATGAGGGAGAAGTCGGAGCACAGGGATCATAGACAattttcccactagtaattaccagttggaagGGTGTTCAAGTGGATAAATCCCAGTCGTATGTGGTaaataccaccttcccacttggttatgaatgcaGCATTAATGATCCTGAGGACATTGATGATGATTTTGTAATATAATGCTGTGATTGAACAGGTCCTTTATAAGGCAACAGAAGGCACTTTGTGTTCAACAGTAAAATGGAGGAACTTAAGTAGTTTATATAATCAAGAAAAATACACATGTACTATCTGTGACATGTGGGTGAATGTTGTTTTTTAATTTTGTTTTTGCTTCTTTATGGTgtttttaaaacaaaaaaaaacttggCCCATGGCACTCGCTTAGTTCAATCAAGACCTGAAAGATGGCATTAGTTAGACCCGGCCCGGGACAACAGGCCCCAATGAGATGTGGCGAAATGGATCAGAACCAAACCAGGTCTGGGTTCAATGGATTTGGCTAGTTCGGTCTTTGGCTTTAGTTTGTGATGCTATTTGTACTTGCAGATGAGGGGAAGAGTAAAAGAGAATTTGTTTAGTTTGTTTTGCGCTTTTGCATCAAAATTAAATATGAATAAAGTGTTTGATTACAGTTCTGAATCTGTCATGTATGACACGTTTTAGTGTGCTGGCGTGTTAGCAGGGGCAATTACCTCCCTAAGCAACACAATGTAAAacataataaatatattttttaaaacaa

Function

GO:

id name namespace
GO:0015761 mannose transmembrane transport biological_process
GO:0000323 lytic vacuole cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005537 mannose binding molecular_function
GO:0015578 mannose transmembrane transporter activity molecular_function

KEGG:

id description
K10089 M6PR; cation-dependent mannose-6-phosphate receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256125 lncRNA upstream 1541 11397874 ~ 11398304 (+) True G224037
TU256122 lncRNA upstream 9949 11389657 ~ 11389896 (+) True G224034
TU256121 lncRNA upstream 10700 11388906 ~ 11389145 (+) True G224033
TU256100 lncRNA upstream 31626 11365425 ~ 11368219 (+) True G224016
TU256099 lncRNA upstream 33904 11365425 ~ 11365941 (+) False G224016
TU256143 lncRNA downstream 25649 11432227 ~ 11432808 (+) True G224051
TU256149 lncRNA downstream 41003 11447581 ~ 11447936 (+) True G224055
TU256148 lncRNA downstream 41536 11448114 ~ 11448478 (+) True G224054
TU256150 lncRNA downstream 43315 11449893 ~ 11450122 (+) True G224056
TU256151 lncRNA downstream 43692 11450270 ~ 11450539 (+) True G224057
XM_036963852.1 mRNA upstream 53327 11340306 ~ 11346518 (+) True LOC110520909
XM_036968802.1 mRNA upstream 61227 11324050 ~ 11338618 (+) True trpv6
XM_036968807.1 mRNA upstream 67529 11324050 ~ 11332316 (+) False trpv6
XR_005040884.1 mRNA upstream 121211 11275180 ~ 11278634 (+) False LOC118945782
LOC110509096 mRNA upstream 131305 11261193 ~ 11268540 (+) True LOC110509096
XM_021590127.2 mRNA downstream 4810 11411388 ~ 11420807 (+) True LOC110509154
XM_021590200.2 mRNA downstream 62196 11468774 ~ 11476776 (+) False LOC110509281
XM_021590206.2 mRNA downstream 62196 11468774 ~ 11476776 (+) False LOC110509281
XM_021590208.2 mRNA downstream 62196 11468774 ~ 11476776 (+) False LOC110509281
XM_021590203.2 mRNA downstream 62199 11468777 ~ 11476776 (+) True LOC110509281
TU256123 other upstream 7883 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 225482 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 356153 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 358585 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 404430 10994058 ~ 10995415 (+) True LOC110537149
TU256146 other downstream 26542 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 174204 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 381951 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 607930 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 614387 12020965 ~ 12022444 (+) True G224297

Expression Profile