RNA id: XM_021590127.2


Basic Information

Item Value
RNA id XM_021590127.2
length 3678
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110509154
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11411388 ~ 11420807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGAATGGTAAAGAATGAGAGGGGGCGGGATTTCTCTCATCTGGCTCACCGTTGTTTGCTTCACACAATAATCAGAAAAACATCAAAGATTCCTTCCAAAAGCAAATGCGTAAAACGTTTACGGATAGAAGCTGGATTTTATAtttaaaaggttaaaaaaaataaaggtcCAGGAGATTGAGAGAGCATGGATGCAGGTGATGACCAGAACACGGGTCCTACCAATGGGAATGCGCCGTCTGCTGGGAACTCCCGCCCTCCCCAGATAGCCCACATGTCTCTGTATGAGAGGCAAGCTGTGCAGGCCCTTCAGGCGCTGCAGAGACAGCCGAACGCAGCCCAGTACTTCCAGCAGCTCATGCTGCAGCAGCAAATCAACAGTGCCCAGCAGCTTCACAACCTGGCTGCCGTGCAACAGGCCACCCTCGCTGCTAGTCGCCAGTCCAACTCTCccaaccacagtgtctcccaagcAACCACCACTGTCAATCTGAGCACCACCTCTGGGGGAGGGACCATGACCAATCCCCGCCCCCTCGGCCCTGCCACATCAGTGACATCATCAGCTCTCAGCCAATCAGTGCTGCTGGGTGGGAACTCAGCCGGACAGGGCCAGATGTACCTGAGAGTCAACCGCTCCCTCAGGGCACCCCTCGCAGCCTCCCAGCTCATCTTCATGCCTGGTGGCTCAGCAACGGCTGCGGTAGCGACAGTTGCACAGCAACAGCCtcagcaacaacagcagcaacaggAAGTCCATCCCACCTCCAATGCCCAATCCGACAATGACCAGGTGCAAAACCTGGCTCTCCACTGTATCTCCACTCCCAGAGTGGCCGCAGTGAAGACAGAGTTTCCAGACAGGAGAGACGCAGCCAACTATTCTCTAAGTCAACAACAACAGCATCctcagcagcaacagcagcagttcTCTCAGAACACCCAGCAGCAACAGCAACATATGGCCAACAAACTGACTAGCTACACTCATCCCACTGCTCTCCCCAGTATAAATGTCAAGACTGGAAACCAGCTGAATATGGCCCCAACCGCTGCCACCTCAGTTCccgcctcctcctccccctctcccacactccctctctcccagctccTCATCTCCCCCTCAGGCCTATGTCAGGCCCGGGCGGTAACCACAGTTACCCCTGCTGCCACGGTGACGCACATCCTAGTCCCCACCTCCAACGTTCCTACCTCCTCTCAAGGCTACCCCATAGGTTCAGTCGCCCCCAAAACTAACGTCAACACCCAGACCTTGGTGGTGCAGCCACTGCAGCAGTCCAACACTAACTTGGACAAGGTGAGCCACAGCTCTGGCCCTGTGCACATACAGCCCAAAACCTCACAGGGTCACCGCTTACCTGTCCAGCTTTCCCCACGCCACCCTCCACCTATCCTCCCGGCTCCGCCCAACACGGGGGGCAACCACCCGCCCCATGTCCCAGTCCAGCTGGTGGGAGCTAGGCAGGGCTCAGTAGGAAACTCCCAGGCTTTGGCACAGGCCCGAAGCTGCTGCCCCCAGGACAACGGCATCGCTATAGCCTCTACTGGAGGGAACACCACGGCAAAGCCTGCAATTGGCTCATTGAAGAGGAAGTCGGAAACTGATGCAACCAATGAGATGGTAGTCGAACCTTCCCAACTTTGCTGTCCACCAATGAGAGATTCTGCCCCTCTATCTCCCGCCCCCACGATGGACTCAGcTCCTAAAGTGGTGCcagccttctcctctccccccaccctGTCTCTACCCCTGtcttggggggtggggggtcagggAGACAGAGCCCCTCTGCCCCAGGCGGTGGTCAAACCTCAGGTCCTCACCCACCTCATAGAGGGTTTTGTCATCCAGGAGGGAGCTGAGCCTTTCCCTGTGACTGGGCCAGTGAAGGAGCCACTAGCCATGGGTGTTCAACAGGCTGACAATGGAGGCCCTGCAGTGTTGAAGTGTGAGTACTGTGAGAGCTTGGCTCCTGCCAGCCAGTTCAGAGGCTCCAAGAGGTTCTGCTCCAAGACCTGCGCTAAGAGATACAATGTGAGCTGCAGTCATCACTTCCAGGTCAGTAGGGGGCGAGCTTCTGCACGGCCGCCTGGTCCTCCCGTTCCCCCAGACAACATCGTCAGACGCAGGGGTCCTCGCAGGAGTAGCTCGGAGATCGCCTGCGCTAAAATAGCCGGCAGACATTTACCTGTCAAGGAGTGTCGTTCTGAGTCCAGTCGCTCAGAGGATGTGTCCAGttgtgatgaggaggaggaagaagattcCCCATCACTCTCCCCtagctcctccctctcctgccctAGGCCCGCCCACTGCGATCCCCATTTGGACGACTCAGCTCAAGGCAGCCTCCCATTGGATGAGGCCAACTTCCTGTCTGGGAGCCCCGCCCATTGGGGTGTGGAGGAGGTCTGCAGGTTCATCTCTTCACTGCAAGGTTGCGAGGAGCTGGCAGCCCAGTTCCTGTCCCAGGAGATTGACGGACAGGCCCTGCTGCTACTCAGAGAAGAACACCTCATCTCCACCATGAACATCAAACTAGGACCCGCCCTCAAGATCTGTGCCTTCATCAACAGCCTACGAGACTgacgggggaaggagggagggatgaggaagaGGGGTTCCAATGAACTTCAAACTGGGACCCACACTAAAGACTTGTATTAGTGACGTTCAAGCCTGAGACCAAGACTGAAAGGGAGGGGAAAATGGGGGTTGATTTTAATCATAAACCTCAATCATTTTAGAGACTAGATGAAGAGAAGGGGGTTGAATATAGATAGGTAAGAGGGGAAATAATTAGAATATGCTTAGACTTTCCTGGACATGGAATGTGCAAAAAAATCTGATAGTCTGTCTTTAGAGTTCATGTTTGTGAGGTAAACTGACAAAGTATGGGtgagttcgtgtgtgtgtgtgtctgtcaggagAAACATATACTCATTTGACACTGCAAACGTGGTCACCTACAGTAAccgtggctagctagctaggacaGTTCAAGTTGCCTTTTTCTACATTTCAACGGTGCTATAACCATAGTGTTATTATTGAAAATGGTCCATTTCACTTTTCTTTCTACAAAGTGGATTTGTAATGTTAATGTAGATGCCAGGCTCTAAGTGTATGAAAGGACATTGAAGAGCTTTAATTCACTTTTTTTTCTACCAGATACAACCCTGTTTTAAAGCTTTGATCTTTTGTACTACAATCAAAGTTATTCTTTTGGTGTGGAAGTTTTTCATGGAGGGGGATGTAGTGAGTATTAGTAACTGACTGAACTACCTGAATATGGGTATTTGTCCTGAGAGGGGAGATACTCTGTGTATGCAGTACTACCAATAATATGGTTCCTGTTACTGGAACTATGCTCTTTAGCTCTGAGTGTTGTTTGTATATGGCTGCTACAGATTCAGGGCTATTCAACGCCGGTCCTGGAGGGCTGAAAcacttctgtttttttgtttctacttggtagttaattgcactcacctggtgtcccaggtctgaaccAGTCCCTTATTAGGAGAAGATGAAAATTAGAAATGTTTCAGCCCTCCGGGATCAGAATTACACTGAtcgaaaatataaacacaacatgtaaagtcttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256125 lncRNA upstream 13084 11397874 ~ 11398304 (+) True G224037
TU256122 lncRNA upstream 21492 11389657 ~ 11389896 (+) True G224034
TU256121 lncRNA upstream 22243 11388906 ~ 11389145 (+) True G224033
TU256100 lncRNA upstream 43169 11365425 ~ 11368219 (+) True G224016
TU256099 lncRNA upstream 45447 11365425 ~ 11365941 (+) False G224016
TU256143 lncRNA downstream 11420 11432227 ~ 11432808 (+) True G224051
TU256149 lncRNA downstream 26774 11447581 ~ 11447936 (+) True G224055
TU256148 lncRNA downstream 27307 11448114 ~ 11448478 (+) True G224054
TU256150 lncRNA downstream 29086 11449893 ~ 11450122 (+) True G224056
TU256151 lncRNA downstream 29463 11450270 ~ 11450539 (+) True G224057
XM_021590118.2 mRNA upstream 4810 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA upstream 4810 11399845 ~ 11406578 (+) True m6pr
XM_036963852.1 mRNA upstream 64870 11340306 ~ 11346518 (+) True LOC110520909
XM_036968802.1 mRNA upstream 72770 11324050 ~ 11338618 (+) True trpv6
XM_036968807.1 mRNA upstream 79072 11324050 ~ 11332316 (+) False trpv6
XM_021590200.2 mRNA downstream 47967 11468774 ~ 11476776 (+) False LOC110509281
XM_021590206.2 mRNA downstream 47967 11468774 ~ 11476776 (+) False LOC110509281
XM_021590208.2 mRNA downstream 47967 11468774 ~ 11476776 (+) False LOC110509281
XM_021590203.2 mRNA downstream 47970 11468777 ~ 11476776 (+) True LOC110509281
XM_036963860.1 mRNA downstream 58990 11479797 ~ 11489832 (+) True LOC118944450
TU256123 other upstream 19426 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 237025 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 367696 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 370128 11036277 ~ 11041260 (+) True mfap5
TU255732 other upstream 415973 10994058 ~ 10995415 (+) True LOC110537149
TU256146 other downstream 12313 11433120 ~ 11436460 (+) True G224052
TU256224 other downstream 159975 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 367722 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 593701 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 600158 12020965 ~ 12022444 (+) True G224297

Expression Profile