RNA id: XM_021590203.2


Basic Information

Item Value
RNA id XM_021590203.2
length 1908
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110509281
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11468774 ~ 11476776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTGCATTGGCTGTAATTCAACACAATGAATTTAGACCACTACCATTTCCACACATTGCAGAGGCGCGGAAGTTGGTTTCGTAGGAATGTTGGGGGAATGCGGTATGCTGGAACGAGACAGAAGGGGGCTTCGGAAATGCTCTGTGACTCTCTGCAAAGAGATGGTGGTGGACGAGCTGTTCATTCAGTCCCTGCAGACAGACGACATTCTCACCGACAGCATGGCAGAAAGCATCCTGGTGGAGCCGACCTCCCACAAGCGGAGCTGGCGTCTGCTGTCCCTGCTCCCCAAGCGTGGTCCCAGAGCCTTCAGCAGCTTCTGCTCAGCACTGAGAGACACAGAGCAGCAGCACCTATGTGCCCTGCTCACAGAGTCaccagagagggatggagagagacagTGTCCCCAGACAGCTAAGGCGAAAGACAGGGCTGAGGAGGTGATATCCACAGCATACCCAATCCAAGCTTCAGACCGCAACGCCCCATTCACAAAGACCCCAGTCAaagacagtgaggaagagggggatgaagagaAAGAGAGATATGTGGACTCTCCCCTCCCACTTCCCACCCAGGAGGGGATTGTTCCAGCCAAGAGAGCCAGAACACAAGAGTCAATGGAGATGTGTCTGGATGCAGACAGTCCCATCACCAGCTCTGTTCTTCCCTGTACACCAGACTTCTACTTAAAACACTGCCAACAGTCCTATAGTATGGTGTCCAGTCCTCGTGGCCTGGCCTTGGTGATCAGTAACGTCTCCTTTGACCCCTGTGCTGCTCCTGACCTGGACTccaggaagggaggggaggtggaCGAGGAGGTCCTCAGGAAGGTGTTCACTGAGCTGGACTACATAGTCACCGTCCGGAGAGACCTCACAGCTCCGGGCATGCGGGAGTGCATTGAGCAGTTTGGCAGACGGCAGCAGCACCAGACCGTATCCAGCTGTGTGGTGTGTCTGCTGTCCCATGGAGTAGAGGGGGCTATCTACGGCACAGACGGACAGCTACTGGAGttggACTGGGTGTTTGAGGCATTTGACAATGcccactgtcctctactgcagaATAAACCCAAGATGTTCTTCATCCAGGCCTGCAGAGGAGaggaGATGGACTGTGGGGTGGAGCAGTCAGACGGGCCAGAGAGGACCCAGTCTCCTGGCTGTGAACAGAGggatgcagggagggagggagagggagatggagacacCAGGCagacggaggagagaggcaggctcagagtcaaaCTGCCCCAGCGCTCTGACATGATCTGCGGCTTCGCCTCCCTCAAagGCACTGCAGCCATGAGGAACACCAAGAGAGGATCCTGGTTCATCCAAGAGGTCAACTCAGCACTCCGCTTCAGAGCCAGAGACACACACCTATCAGACATACTGGTGCagGTGAATGGTCGTATTAAAGACAGAGAAGGCTATGCTCCTGGCACCCCCCACCATCGCTGTAAGGAGATGTCTGAATTCACCAGCTCCCTCTGCAAAGACCTCTACCTGTTCCCCAAGTACCACCCTCAGTACTGACACGCACACATGCtgttacacacactcacagaggaTTAATGAATTCACATTTGCTGTGCAAATTCTCTCACAGACAAACTCTTGGAAAGAAAAAAGGACCGAGTTGTTGTAAATCTATGTGCTTGGTAATGGGCATGAAGTATACATGACTGGTATGCAGCTGATGTGTGTACCTACCTATCAGCTAGGCTTGCTATATGTGTATCTGTGCCAGTTAGAAATGGGATTGAAATGTTCTAGGAAACATTTTTAGCTCGTTAACACACCAGAATATATTTAAATGTATCGCTTTTAATTTCTTACTAAACAGCAACTTTTGGGTTTGAAGTTTATTCTTTTTATAAACATGTATTTTGTATGCA

Function

GO: NA

KEGG:

id description
K02186 CASP2; caspase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256172 lncRNA upstream 4124 11464049 ~ 11464653 (+) True G224071
TU256157 lncRNA upstream 13552 11455000 ~ 11455225 (+) True G224062
TU256151 lncRNA upstream 18238 11450270 ~ 11450539 (+) True G224057
TU256150 lncRNA upstream 18655 11449893 ~ 11450122 (+) True G224056
TU256148 lncRNA upstream 20299 11448114 ~ 11448478 (+) True G224054
TU256185 lncRNA downstream 15802 11492578 ~ 11493341 (+) True G224081
TU256205 lncRNA downstream 53713 11530489 ~ 11531732 (+) True G224097
TU256208 lncRNA downstream 64092 11540868 ~ 11541486 (+) True G224099
TU256214 lncRNA downstream 75508 11552284 ~ 11552590 (+) True G224105
TU256236 lncRNA downstream 84983 11561759 ~ 11561981 (+) True G224126
XM_021590127.2 mRNA upstream 47970 11411388 ~ 11420807 (+) True LOC110509154
XM_021590118.2 mRNA upstream 62199 11399020 ~ 11406578 (+) False m6pr
XM_036968846.1 mRNA upstream 62199 11399845 ~ 11406578 (+) True m6pr
XM_036963852.1 mRNA upstream 122259 11340306 ~ 11346518 (+) True LOC110520909
XM_036968802.1 mRNA upstream 130159 11324050 ~ 11338618 (+) True trpv6
XM_036963860.1 mRNA downstream 3021 11479797 ~ 11489832 (+) True LOC118944450
XR_005039824.1 mRNA downstream 19530 11496306 ~ 11501325 (+) True LOC118944486
XM_036968965.1 mRNA downstream 103532 11580308 ~ 11600483 (+) False LOC110520911
XM_036968958.1 mRNA downstream 103759 11580535 ~ 11600483 (+) False LOC110520911
XM_036968988.1 mRNA downstream 125607 11602383 ~ 11608965 (+) False kel
TU256146 other upstream 32317 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 76815 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 294414 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 425085 11041848 ~ 11043692 (+) True G223748
TU255727 other upstream 427517 11036277 ~ 11041260 (+) True mfap5
TU256224 other downstream 104006 11580782 ~ 11590344 (+) True LOC110520911
TU256282 other downstream 311753 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 537732 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 544189 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 782545 12259321 ~ 12326075 (+) False LOC110509826

Expression Profile