RNA id: XM_036968988.1


Basic Information

Item Value
RNA id XM_036968988.1
length 3178
RNA type mRNA
GC content 0.53
exon number 17
gene id kel
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11602383 ~ 11608965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGATGCAGGGTAACAATGTGTCCTCTTAACGTTTTGACTTTTTCTGTGTTTCAGAGTTGGGCGGATTTTATTGGCTCTGTACCGACCTGTTGCTTAGGGACATTATGTTCTCATTACATTTGAATGACATTTGAGTTAAAACTCAAAGTCATTTTAGGGTTGAAGAGGATTCCTCCTACACATCAAACACACCCATGTGCATGTCACAGTCTAAATGGATCCACAGTGCCAACTGAtaatgtagcagagagagaggtaggctgCCAGGTCAACTCTGTTTATCAAAacgtcagaggaggaggagagcagtgAGTGATGAAAGAAGATAGAGAGCTGAGATGACAGCTGGCTgatggggggagagatagaggtctGGAGGTTATGTGTGAGGGAGAAATGAGAAACGTCAGTGGCTGCAACAAGCTAAACCCAGACAGACCGAACAAGACACAACAGAGTATGGCAGAAACCCCAGCAGAGCCTCAGATTGACTGTGAGCTGCGGCCCCCATCTAATACCCTTTCTGAGCCTCAGCTCCAGTACCAACTACATCCTCTCTCTGAGCCCCAGCCACTACCCCAGCCTGATACCCTTCCCCAGCCCCTGCCCCAGCCTCAGCCAGATAGCCTTCCTGGGCCCCAGCTCCTACCCCAGCCTGATACCCTTCCCCAGCCCCTGCCCCAGCCTCAGCCAGATAGCCTTCCTGCGCCCCAGCTCCTACCCCAAGCTGATACCCTCCCtgagccccagccccagcctcagccggATAGCCTTCCTAGGCCCCAGCTCCTACCCCAGCCTGATACCCTCCCTgagtcccagccccagtctgaAGAGGAGGTGAAGCCCTGGGTGTGGACACGTCGCTGCGTACTCCTACTCTTCCTCCTGGCATCCTCCTTCTGTGCCTCCATAGTGGGCCTGGCCTACTACTCCCAGCAGCACCTCTCACCAGAGAGCACACCGCCAGCCTCTCCTCCATGTACCTCCCCGGCTTGTCAGAGGGCTACCGCCCGTCTTTCCATCTCAGTCGACCCCTTCTCTCAGCCCTGTGACTACTTCCTGTTTCCCTGTGGGTCTGAAGGGGCATCTCTGTccaacagggggagacagaggggcaAGGGCATGCCCCTACACCCACAGGGCCACAAGAGCAGGGCAGcacaggcagagaaagagagagaaagagggaggaaggagagagagacaggcacggACATAATAGAAAAGGCTCCAGCAGACAgaatgccagacagacagactgcactACTGCTGACAATGAGGGAGATTTTGGAAGCTGAGGACCGCTCCAGCCCGGGTAACTCAGCTAGGCAGAAGGCCTGTATGTTCTACCGTTCTTGTATGGACACTGGCCCCACAGAGACTGCCGGGCCAGAACCTTTCCTCAGGCTAGTCCACAAGCTGGGTGGCTGGGCTGTATCAGGCCAGTGGAACCAGACAGATTTCAACTCCACTCTGTCTCTACTGATGAGAGACTATGGCACCTTCCCATTCTTTAGTGTTTATGTGGGCAAGGATCCTAACGACACTCAAGGAGACAAGCGATACATACAGATTGATCAGCCGGATTTTCAGATACCTACTGAATGGAGCAGCAAGACTCAGAAGTCCAAAGCTAACACCCAGaTCCTGCGTCTTTTCCTGGCCTCGTATCAGAGGTTGCTGGCCCTGTTGGGCTCTCCCTCCAGCAGCACCATTCTCCATATAGGCCtgttcatctctctgtcctctgaacTGGCTGTAGCTGCCTCTCCTCTGCCGCATCGCCTGCAACAGGGGCTGCTGTACCAGCGCATCACCATCAAAGAGCTACaggtgcggACCCTGGCCCCTGCCATTGATTGGCTGGGCTGTCTACAGACCACCTTCCATCCCCACCCTGTTAGCCAATCGGATCACGTCCTCCTGCACAACCTCCCTTACATAGTCCACATGTCCCGCATCATCGGCAAATGGCTGAACAAGCATGAATTGAGTGGCAGTGGCCCTCTTCACACCTTCATGGTCCTCAGTCTCCTCCACACTGTCATACCCGCGCTGGACTCCAGGTTCACTCAGACAGAGAGGAATTTCTCCTTAGCTCTGGGGACTACAGAGGAGGATGTCCCTCGCTGGAGGCAGTGTGTTCTGCAGACTGAGAAAGGGTTTGACACGGTACTAAAACACATACTGAGAGAGACCACCGCATACACAGAGGCAGAGGAGCTGATTCAGAATGTCTATTCCTCCATCAAGTCCAAACTATCTGATCTCAGGTGGACAGATGAGGAGTCTCGCATGTCTGTTTTGAATAAGATTCAGTCTCTAACTCCAAGACTTTCAACtaaaaacaacattttcagtgAAGCTGAACTCAACCAACTGTATTCAAAGtctctctccctccagcgcCAGAGACCAAGCAAACTCTTTTCCCAGGCTGAAGGAGATGATATtTGGTCCCTCACTCCATTTATCTCCGGCAATGAGCTAGTCTTTCCCATAGGGATGTTTGTCCAGCCTCTCTTCCACCCTACCTATCCCAGGGCCATCAACTTTGGGGTTTTGGGATCTTTGATGGCCAAAGATATTCTCCATCTCCTTCTACCCAACATCCATTCTCAGAGTGTGTCTCCCAGGTCCATAGCAGAGTGTGTGCGGTACCAGTACCTGAGTATGACAGagggaccagggagagagggggcgtTCTCGCTGTCACCGGCACAGCAGCAGGAGATGTGGGTGCAGTACTCTGCTCTGCAGATTGCACTACAGGCTTACAATCAGAGTTTGAAGAAGTATCCTGGCGACTCCTCTCTCTCAGGCCTCTCTCACACTCATCTGTTCCTTACTTCATTCACTCAGATCAACTGCGACTCTGACCCGTACCACGAGTTCATGCCCTTTGAACCTTCCTTTCTGGTTACTGTCATCTGTGGGTACTCTAACCTCTGCCCTACGACCCTCTCCTGCCCCAACAAACCCCAGCAGCACCTCTTAGGGACATGCTGACCTACAGATCTACAGTAACATCTCCTACCAAACAAAAAATGCAGAGCCATTGATGAACACACAAGACTGTGATTTAAACAGATCAGTGTGTCCCCCCCCGGGACGGTTGATCTAATGTAGGCTAatatgattagcatgaggttgtaagtaacacacaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256245 lncRNA upstream 25925 11576151 ~ 11576458 (+) True G224134
TU256236 lncRNA upstream 40402 11561759 ~ 11561981 (+) True G224126
TU256214 lncRNA upstream 49793 11552284 ~ 11552590 (+) True G224105
TU256208 lncRNA upstream 60897 11540868 ~ 11541486 (+) True G224099
TU256205 lncRNA upstream 70651 11530489 ~ 11531732 (+) True G224097
TU256226 lncRNA downstream 4601 11613566 ~ 11615975 (+) True G224116
TU256249 lncRNA downstream 9722 11618687 ~ 11619112 (+) True G224138
TU256274 lncRNA downstream 84858 11693823 ~ 11694023 (+) True G224163
TU256276 lncRNA downstream 87529 11696494 ~ 11696725 (+) True G224165
TU256278 lncRNA downstream 92087 11701052 ~ 11701355 (+) True G224167
XM_036968965.1 mRNA upstream 1900 11580308 ~ 11600483 (+) False LOC110520911
XM_036968958.1 mRNA upstream 1900 11580535 ~ 11600483 (+) False LOC110520911
XR_005039824.1 mRNA upstream 101058 11496306 ~ 11501325 (+) True LOC118944486
XM_036963860.1 mRNA upstream 112551 11479797 ~ 11489832 (+) True LOC118944450
XM_021590206.2 mRNA upstream 125607 11468774 ~ 11476776 (+) False LOC110509281
XM_021590250.2 mRNA downstream 1614 11610579 ~ 11613064 (+) True LOC110509324
XM_021590271.2 mRNA downstream 15000 11623965 ~ 11630699 (+) False LOC110509359
XM_021590266.2 mRNA downstream 15004 11623969 ~ 11630699 (+) False LOC110509359
XM_036969015.1 mRNA downstream 15066 11624031 ~ 11630699 (+) True LOC110509359
XM_021590277.2 mRNA downstream 21878 11630843 ~ 11635397 (+) True LOC110509378
TU256224 other upstream 12039 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 165923 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 210421 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 428020 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 558691 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 179564 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 405543 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 412000 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 650356 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 744861 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile