Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021590250.2 |
| length | 1042 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | LOC110509324 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 11610579 ~ 11613064 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0032259 | methylation | biological_process |
| GO:0008168 | methyltransferase activity | molecular_function |
| id | description |
|---|---|
| K14568 | EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU256245 | lncRNA | upstream | 34121 | 11576151 ~ 11576458 (+) | True | G224134 |
| TU256236 | lncRNA | upstream | 48598 | 11561759 ~ 11561981 (+) | True | G224126 |
| TU256214 | lncRNA | upstream | 57989 | 11552284 ~ 11552590 (+) | True | G224105 |
| TU256208 | lncRNA | upstream | 69093 | 11540868 ~ 11541486 (+) | True | G224099 |
| TU256205 | lncRNA | upstream | 78847 | 11530489 ~ 11531732 (+) | True | G224097 |
| TU256226 | lncRNA | downstream | 502 | 11613566 ~ 11615975 (+) | True | G224116 |
| TU256249 | lncRNA | downstream | 5623 | 11618687 ~ 11619112 (+) | True | G224138 |
| TU256274 | lncRNA | downstream | 80759 | 11693823 ~ 11694023 (+) | True | G224163 |
| TU256276 | lncRNA | downstream | 83430 | 11696494 ~ 11696725 (+) | True | G224165 |
| TU256278 | lncRNA | downstream | 87988 | 11701052 ~ 11701355 (+) | True | G224167 |
| XM_036968988.1 | mRNA | upstream | 1614 | 11602383 ~ 11608965 (+) | False | kel |
| XM_036968982.1 | mRNA | upstream | 1614 | 11602384 ~ 11608965 (+) | False | kel |
| XM_036968989.1 | mRNA | upstream | 1614 | 11602384 ~ 11608965 (+) | False | kel |
| XM_036968975.1 | mRNA | upstream | 1614 | 11602388 ~ 11608965 (+) | False | kel |
| XM_036968985.1 | mRNA | upstream | 1614 | 11602396 ~ 11608965 (+) | True | kel |
| XM_021590271.2 | mRNA | downstream | 10901 | 11623965 ~ 11630699 (+) | False | LOC110509359 |
| XM_021590266.2 | mRNA | downstream | 10905 | 11623969 ~ 11630699 (+) | False | LOC110509359 |
| XM_036969015.1 | mRNA | downstream | 10967 | 11624031 ~ 11630699 (+) | True | LOC110509359 |
| XM_021590277.2 | mRNA | downstream | 17779 | 11630843 ~ 11635397 (+) | True | LOC110509378 |
| XM_036968998.1 | mRNA | downstream | 22613 | 11635677 ~ 11654262 (+) | False | ncapd2 |
| TU256224 | other | upstream | 20235 | 11580782 ~ 11590344 (+) | True | LOC110520911 |
| TU256146 | other | upstream | 174119 | 11433120 ~ 11436460 (+) | True | G224052 |
| TU256123 | other | upstream | 218617 | 11391333 ~ 11391962 (+) | True | G224035 |
| TU255809 | other | upstream | 436216 | 11167009 ~ 11174363 (+) | True | LOC110509074 |
| TU255730 | other | upstream | 566887 | 11041848 ~ 11043692 (+) | True | G223748 |
| TU256282 | other | downstream | 175465 | 11788529 ~ 11790639 (+) | True | mrpl51 |
| TU256420 | other | downstream | 401444 | 12014508 ~ 12014805 (+) | True | LOC110537447 |
| TU256429 | other | downstream | 407901 | 12020965 ~ 12022444 (+) | True | G224297 |
| TU256552 | other | downstream | 646257 | 12259321 ~ 12326075 (+) | False | LOC110509826 |
| TU256553 | other | downstream | 740762 | 12353826 ~ 12354319 (+) | True | LOC110509826 |
