RNA id: XM_036969015.1


Basic Information

Item Value
RNA id XM_036969015.1
length 2788
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110509359
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11623965 ~ 11630699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACGAGGAAAAAAAACACATACTACCTGTGTAGGTGTCAGTCATGGGCAGGAAGTTGGATCCCACCACTTATGTGAAGAAGGGGCCGGGGCGGAAGTCCAGGAAGCAGAAAGGAGCAGAGACTGAGCTGGCCAAGTTCTTAACGGATGAGGATACTGCACCAAAACGACTGTCAAGCAGGTCCAGGAAAAGAGCTGGGAAGCGAGCTCAAGTGACCAAAAAGCCCAAGGAAAGCATTGAGAAGGAGGAGCCAAAAAAAGGATTCACAGATGAAAACAGTGAATGGCTGAAGCCAGCAAAGAGGAAGCGTGAGGTCGGCCAATCAGATAACGAGGACGACAGTGACAGCCAATGGGAGCAGGAAGAGGACgagggacaagagggaggggagaacaaTAAAGGGAAAAACATTCTAATTGAGGGAGATGGTGATGATAACGATGACCTGGTTGATGACTACGGTGCATTGGAGGACagcagtgaaggagagggagaagtagatGGTGATGGAGAGGAGCTGCTCCCCATCGAGCGAGCTGCCAGGAAGCAGAAGAAGCTGCAGGAAGCAATGGGCCAGGagagtggtgatgatgatgatgatgatgataataaggGGAAGAGTGGAGATGAAGACATGGATGAAGATGACACGGTACAGGCTAATTTAGATGATATGGACAAATTCATACTACCTGGAGCAGAGGAGATAGCAAAAGAGGGTGTTTTGCTTGTAGACCTGCAGACCATCCACCAGAGAATAAAGGACAACGTGGATGTTCTCTCTCACTTTGCaaccaagagagaggaggggaaagagagaacagagtacCTCTCTCTCCTCAAAAAGGATCTTTCCACTTACTACAGCTACAACAATTTCCTCATAGACAAACTGCTGGATATCTTCCCAGTGTCAGAGCTGATTGATTTCCTGGAGGCCAATGAAATTCAGCGACCTGTCACCATTCGGACCAATACACTGAAGACAAGGAGGAGGGACTTGGCTCAGGCCCTGATCAACAGAGGGGTGAATCTGGATCCTCTGGGGAAGTGGTCTAAAGTGGGCCTGGTCATCTTTGACTCCTCAGTACCCATCGGTGCGACCCCAGAGTACCTGGCTGGTCACTACATGCTGCAGGGAGCCTCCAGCTTCCTGCCTGTCATGGCTCTCTCTCCCCAGGAGGGGGAGACTGTGCTCGACATGAGCTCAGCTCCCGGGGGAAAGACCACCTATATGGCCCAGTTGATGAGGAACACAGGTGTGATTGTGGCCAATGATGCCAGTGCTGACAGACTGAAGAGTGTGGTGGGCAACATCCACCGTCTGGGAGTCACCAACTCAATGATCTGTAACTACGACGGGAGGCAGTTCCCTAAGGTAATGGGTGGGTTTGACAGAGTGCTGCTTGATGCTCCCTGCTCAGGCACAGGAGTAATCTCCAAAGACCCTGCTGTGAAGACCAGTAAAGACGAGTCTGACATCCAGCGGTTGGCCCACCTGCAGAAGGAGCTCATCCTGGCGGCCATCGACTCGGTCAACGCTGAGTCTCCCTCTGGAGGCTATCTGGTGTACTGCACATGCTCTATAATGGTGGAGGAGAACGAGTGGGTAGTGGACTATGCTCTCAAGAAAAGAAACGTCAAACTCGTCCAGACTGGACTGGACTTTGGCAAAGAAGGTTTCACCAGATTCAAAGAGAGACGATTCCATCCCTCTCTGAAACTCTCACGCCGGTTCTATCCTCATTCCCACAACATGGACGGTTTCTTTGTGGCCAAGCTGAAAAAGTTCTCCAACACGGTCCCAACCACAGCAGTTGAAAAAGACGGAGAAGAGGAAACCGAGCCATCTGAGGCAGTGGAGGTTACAGCTGATTCCTCTGATGAGGACGGACCATCTAATGCAGGGTCTAAGAACAAGTCCAAGAAGCAGAAGCCAGTCCCTGGCAAGCCAACTGTGTCACAGAAGACCACAGCCAACGGGAAGCCAGCCAAAAGCATCGGCAAGAAAACAACAAACCCAAGCACCTTGAAAAAGAATGAGAAACCAACCGGGCAGAAAAAGGCAAAGATCGCTAAGATGGATGGTGGGACTGTGAAAGTGGACGGAGAGCTCAAGAAGtccaacacagtcaaaacagaaGGGGAAACGACCAAACAGTCAAAGGAAGGGAGCAGGTTTGAGAAAAAGGGCGATAAACAGAGGAAATCCCCCATGCAGAGCAAGAAGAGAATGGGGAAGAACAAATTCAATAAGTTGAAGAAGCTGCTGAAAAAAGAAGAGGTTGGACAATGAACATGTATAAAATGTTTATGAAAATGAAGACTAATTATTTTGCAGTTGTCGCTAGTCAGAGAGGTCTAATTTTCATGACAGATCAGTAATTTTCACAAAAGTTGAGCAGAGCATGTTGGCGTTGTTAAATATTGCCTCCCTTCAGACTGAAAATCACTCAGGGCCCCCTTCGAAGGCCCTGAGCCTCAGCCCCTTTTGGAGTAGGTAGATGATGTCCCTAACCACACAGATACTGGATCAGAAATGTTTCATGGCCCTCGTGGATGATTGGTTCTAGGTTAGGAATATGGCAATATGATCCTAGCTCTGGTTGAGGGCAACGTTCTAACTTCAACTCTCGTTAAGCATCACAATTTCACATTTTATTCCTTCCTTGCAATGTTATCTGTTTGGTTTAATTTCATTTTGTGTCTTTTGGTCAAATTGATATGTATTGTAAAGACTAATCCTTGAGACAATAAAATGTTTCAGATTGTTTGCCATATACCCCC

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256249 lncRNA upstream 4919 11618687 ~ 11619112 (+) True G224138
TU256226 lncRNA upstream 8056 11613566 ~ 11615975 (+) True G224116
TU256245 lncRNA upstream 47573 11576151 ~ 11576458 (+) True G224134
TU256236 lncRNA upstream 62050 11561759 ~ 11561981 (+) True G224126
TU256214 lncRNA upstream 71441 11552284 ~ 11552590 (+) True G224105
TU256274 lncRNA downstream 63124 11693823 ~ 11694023 (+) True G224163
TU256276 lncRNA downstream 65795 11696494 ~ 11696725 (+) True G224165
TU256278 lncRNA downstream 70353 11701052 ~ 11701355 (+) True G224167
TU256291 lncRNA downstream 121015 11751714 ~ 11751899 (+) True G224177
TU256297 lncRNA downstream 131249 11761948 ~ 11765453 (+) True G224182
XM_021590250.2 mRNA upstream 10967 11610579 ~ 11613064 (+) True LOC110509324
XM_036968982.1 mRNA upstream 15066 11602384 ~ 11608965 (+) False kel
XM_021590277.2 mRNA downstream 144 11630843 ~ 11635397 (+) True LOC110509378
XM_036968998.1 mRNA downstream 4978 11635677 ~ 11654262 (+) False ncapd2
XM_036968999.1 mRNA downstream 4978 11635677 ~ 11654262 (+) True ncapd2
XR_005051430.1 mRNA downstream 6267 11636966 ~ 11637264 (+) True LOC118964380
XR_005051429.1 mRNA downstream 8417 11639116 ~ 11639420 (+) True LOC118964379
TU256224 other upstream 33687 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 187571 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 232069 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 449668 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 580339 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 157830 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 383809 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 390266 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 628622 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 723127 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile