RNA id: XM_021590277.2


Basic Information

Item Value
RNA id XM_021590277.2
length 1559
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110509378
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11630843 ~ 11635397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGATTGATAATAAAATACCGGTACTTAGATTTGATTTCGGATAAAACCAAAGAACACGTCCTCGCCGGAAGTTGTGTTGTTTACATTTTCCAAGATGGCGGCGGGAATGTATTTGGAACACTATTTGGACAGCATAGAGAACCTGCCATTTGAATTGCAGAGGAACTTCAATTTGATGAGGGACTTGGATCAACGTACGGAGGATCTAAAGGGTCAGATCGACTCCCTGGCAAAAGATTACACATCCAACGCCAGGACCCTCTCGTCTGAACAGAAGCTTACTATTCTGAGGCAGATCCAGCAGTCGTACAGCAAAAGCAAGGAGTTTGGGGATGACAAAGTGCAACTGGCCATGCAGACTTATGAGATGGTGGACAAGCACATCCGGAGACTGGACACAGACCTGGCCCGCTTTGAGGCCGACCTGAAGGAGAAGCAGATAGAGAGCACAGACTATGATTCCACTTCCAGTAAGGGAAAGAAATGTGAGTCCAGGGGGCTGAAAGAGAAGAAGGTGGCTAAAACTCGGTCTAAAGTGAAGAGCTCAGATGAAGATGGCAGTCCGAAGAGTGCACAGAAGAAAGTCAAACTTCTCCAGCCGGGGGAGTTCACTGCTCCAGCTGCTAATTTTGGGAATGTGCATCCCTCTGACGTGCTGGACATGCCAGTGGACCCCAATGAGCCCACCTACTGCCTGTGTCACCAGGTGTCCTATGGAGAGATGATTGGCTGTGACAACACAGACTGTTCCATCGAGTGGTTCCACTTTGCCTGCGTGGGCCTGACGACGAAACCAAGAGGGAAATGGTATTGTCCACGCTGCTCtcaagacagaaagagaaagtaaGCCCCTAAGGTAGAGGGGCCAACCGATTGTAGAGTCAGGATACTACGTTAGTAATGAAGAGAAAGTAACATGACAGTTTCTGTCCCCAGGATAGTATTACATTGTTTATCGGTCTTCTAGCATTGAACAATTGGTGCTTTCTTTTTTTGTTTACTTGATTGTTCTGTCTTGGTTTAATGCAGTGTGATGGAGATATGTGGTTACAGATGTATTTAAAAATGTTTCAGAGGTTATGAGAGTTGATAGGTACGAGAGTtgctttgtttttacatttttatgtttctatttttttgtAACTGAACAATAAACACTAAAATGTGACAGTTAGTGTCCATAATATTGCAGTGTGTGTTTGACTACATGTGATTGACTGGAGTGAAGTGGATTGACGTATTGTAATGGATGCAGTGTTGGACCATCGAGAACTGTTGTGCTTTCAAGTTTGTTACATAATTTTCGATTATATTGTGTGCGCTCTAAAACACGTATTTTAGCCTGACTGAGTGGGGAAATGTTAATTCAAGACATTAGCGCTTTTATCTGTGTGGTAGTTAGTTGATTGAACTACTTTTGACtttttacattttcaaaatgATAGATCTGGTTAAGAGCGAATACATTGCATAAGGGAAATATCAATACTGTAGCTGACACCTGGGTACATGTGAGGAAAATTGTATTTTCAGTTTGAATACAGCTACTACCTCAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11346 ING4; inhibitor of growth protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256249 lncRNA upstream 11731 11618687 ~ 11619112 (+) True G224138
TU256226 lncRNA upstream 14868 11613566 ~ 11615975 (+) True G224116
TU256245 lncRNA upstream 54385 11576151 ~ 11576458 (+) True G224134
TU256236 lncRNA upstream 68862 11561759 ~ 11561981 (+) True G224126
TU256214 lncRNA upstream 78253 11552284 ~ 11552590 (+) True G224105
TU256274 lncRNA downstream 58426 11693823 ~ 11694023 (+) True G224163
TU256276 lncRNA downstream 61097 11696494 ~ 11696725 (+) True G224165
TU256278 lncRNA downstream 65655 11701052 ~ 11701355 (+) True G224167
TU256291 lncRNA downstream 116317 11751714 ~ 11751899 (+) True G224177
TU256297 lncRNA downstream 126551 11761948 ~ 11765453 (+) True G224182
XM_021590271.2 mRNA upstream 144 11623965 ~ 11630699 (+) False LOC110509359
XM_021590266.2 mRNA upstream 144 11623969 ~ 11630699 (+) False LOC110509359
XM_036969015.1 mRNA upstream 144 11624031 ~ 11630699 (+) True LOC110509359
XM_021590250.2 mRNA upstream 17779 11610579 ~ 11613064 (+) True LOC110509324
XM_036968982.1 mRNA upstream 21878 11602384 ~ 11608965 (+) False kel
XM_036968998.1 mRNA downstream 280 11635677 ~ 11654262 (+) False ncapd2
XM_036968999.1 mRNA downstream 280 11635677 ~ 11654262 (+) True ncapd2
XR_005051430.1 mRNA downstream 1569 11636966 ~ 11637264 (+) True LOC118964380
XR_005051429.1 mRNA downstream 3719 11639116 ~ 11639420 (+) True LOC118964379
XR_005051431.1 mRNA downstream 4641 11640038 ~ 11640331 (+) True LOC118964381
TU256224 other upstream 40499 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 194383 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 238881 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 456480 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 587151 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 153132 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 379111 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 385568 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 623924 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 718429 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile