Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001124209.1 |
| length | 1303 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 11 |
| gene id | gapdh |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 11668497 ~ 11673146 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0051402 | neuron apoptotic process | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0035606 | peptidyl-cysteine S-trans-nitrosylation | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0050821 | protein stabilization | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0050661 | NADP binding | molecular_function |
| GO:0035605 | peptidyl-cysteine S-nitrosylase activity | molecular_function |
| GO:0051287 | NAD binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | molecular_function |
| id | description |
|---|---|
| K00134 | GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU256249 | lncRNA | upstream | 49385 | 11618687 ~ 11619112 (+) | True | G224138 |
| TU256226 | lncRNA | upstream | 52522 | 11613566 ~ 11615975 (+) | True | G224116 |
| TU256245 | lncRNA | upstream | 92039 | 11576151 ~ 11576458 (+) | True | G224134 |
| TU256236 | lncRNA | upstream | 106516 | 11561759 ~ 11561981 (+) | True | G224126 |
| TU256214 | lncRNA | upstream | 115907 | 11552284 ~ 11552590 (+) | True | G224105 |
| TU256274 | lncRNA | downstream | 20677 | 11693823 ~ 11694023 (+) | True | G224163 |
| TU256276 | lncRNA | downstream | 23348 | 11696494 ~ 11696725 (+) | True | G224165 |
| TU256278 | lncRNA | downstream | 27906 | 11701052 ~ 11701355 (+) | True | G224167 |
| TU256291 | lncRNA | downstream | 78568 | 11751714 ~ 11751899 (+) | True | G224177 |
| TU256297 | lncRNA | downstream | 88802 | 11761948 ~ 11765453 (+) | True | G224182 |
| XM_036969034.1 | mRNA | upstream | 7384 | 11658813 ~ 11661113 (+) | True | wu:fj39g12 |
| XM_036968998.1 | mRNA | upstream | 14235 | 11635677 ~ 11654262 (+) | False | ncapd2 |
| XM_036968999.1 | mRNA | upstream | 14235 | 11635677 ~ 11654262 (+) | True | ncapd2 |
| XR_005051432.1 | mRNA | upstream | 24737 | 11643456 ~ 11643760 (+) | True | LOC118964382 |
| XR_005051431.1 | mRNA | upstream | 28166 | 11640038 ~ 11640331 (+) | True | LOC118964381 |
| LOC110509388 | mRNA | downstream | 7095 | 11680241 ~ 11682756 (+) | True | LOC110509388 |
| XM_021590398.2 | mRNA | downstream | 9920 | 11683066 ~ 11708251 (+) | False | iffo1b |
| XR_005040921.1 | mRNA | downstream | 9920 | 11683066 ~ 11708251 (+) | False | iffo1b |
| XR_005040923.1 | mRNA | downstream | 9920 | 11683066 ~ 11708251 (+) | True | iffo1b |
| XM_021590506.2 | mRNA | downstream | 35703 | 11708849 ~ 11727254 (+) | True | LOC110509555 |
| TU256224 | other | upstream | 78153 | 11580782 ~ 11590344 (+) | True | LOC110520911 |
| TU256146 | other | upstream | 232037 | 11433120 ~ 11436460 (+) | True | G224052 |
| TU256123 | other | upstream | 276535 | 11391333 ~ 11391962 (+) | True | G224035 |
| TU255809 | other | upstream | 494134 | 11167009 ~ 11174363 (+) | True | LOC110509074 |
| TU255730 | other | upstream | 624805 | 11041848 ~ 11043692 (+) | True | G223748 |
| TU256282 | other | downstream | 115383 | 11788529 ~ 11790639 (+) | True | mrpl51 |
| TU256420 | other | downstream | 341362 | 12014508 ~ 12014805 (+) | True | LOC110537447 |
| TU256429 | other | downstream | 347819 | 12020965 ~ 12022444 (+) | True | G224297 |
| TU256552 | other | downstream | 586175 | 12259321 ~ 12326075 (+) | False | LOC110509826 |
| TU256553 | other | downstream | 680680 | 12353826 ~ 12354319 (+) | True | LOC110509826 |
