RNA id: XM_021590317.2


Basic Information

Item Value
RNA id XM_021590317.2
length 3657
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC118936286
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11754136 ~ 11776033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcatcaccaagcaagcagcatcaccaagcaagcggcaccaccaaGCCAACAGCACTATGAAGAACAAGgatctctccaaacagatGATGTGTAAGACCCAGAGGCACCAACAGGAGGTGCTGTGGGAGTTGGTCCATACTGAGCTCACCTACATCAACAAGCTCACTGTTGTCACTGACTTGGTGATGGCAGCTCTTACCAACCTGCACCAGCATGGATTCCTCTTAGAGGTGGCACCTGAGAGCCTCTTCTCCAACCTTCCCTCCATCCTCAGCGCCCACCGGCTCTTCTGGCAGGAAGTGATGTATCCCATGTTACAGGAAGTCCGCAGGACGGGGAAGCCCTTTGACCCCCTGGGGTTAGAGGCAGGATGCCTGCAGTTCCCTGAGCGTTTCTCCACCTATCTGCACTACTGTTGTAAGGAGGAGAGCACCGTGGACATTACGAGCAAACTGACAGACACCAACCTGCACTTCCACACCTACTTAATGTGGGTGGAGACACACCCCCAGTGTGAGCGGATGCGTCTGGGAGACATGCAGGCCAAACCCATCCAGAGGATCACCAAGTACCCCCTGCTGCTGAAGGCTGTCCTCAAGACCACCCAGGCTCCCCACACTCAGCACACACTCAGGGGCATGttggCTTGTGTTAATGGGTTTCTGGACAGCATCAATGACTACTTGAGGCTTAAGGATGATGAGCAGGCCCTCTCGCTTTCCGCCCAGAAGATAGAGGGATATGACGTGATGGAGGGGATGAATGAGGAAATCGACAAGCATGTCAGAGAGTTCTGCAGTTTTGATTTGACGTGCCCTGTCAGAGGGGTGGGTCCTGGTGTCATACGCAAGCTGCTATTGGAGGAGACCCTGAAGATCAGAGGAAGGAAGGATCACAAGCTGGAGGTGACAGCCCTGCTCTTCTCTGACGTGCTGCTGGTGACCAAGGTCCAGAAGAAGGCAGAGAGACTGAAGGTAGTTCGCCCCCCACTGGCCCTGGATAGAACACACTGTGACACACTCAAAGATGGCTgttcgtttgtggtggtggaggtgagtgttCTGGGCTGTGCGgcaaatgtctacaccttttccaCCTCCAGCCCAGAGAGCTGCTCTACATGGATCTTCACCATCCACAAGGCACAGGAAACACTGCAGggcctgagagagacagaggccagCAGACGACTGCAGACCAAACAGAGAGACCTACAGCTACAGGAACAAGCCACACCCCCTACAGAGCCCAAGATTACCATTGTAGATCAGCTTCCTGACCAATCAGAAGCACAAATCCCTTTTTCTTTGGAGGTGAAACCTGTTGAGGAACTTCTCATCCAATCAGTGAATGGGACATTGGTGTCCATAGCAACAGAAGCGGAACAACCAACTCAGGAACCAGTGCTCTATAAAGATGAAATGTTGCCAGGACAACCACGCAagctcagtgacattcataaCCAATCATTTGCAGGCGGGGTAATGAAAAAGGGGCAAGGAGGTGGCAGGGTCATGGATGAGGTTATGATGTCAGAGGCAAGGGTGAGCGAGATTGGAGACATCAACCAATGGGAGGAGGGGATTGAGTCCAGGGGGATAAAAGAACGAAGGGTGACCTGGACCCATTCCAGACCGTCTAACTCTCTACCTCGAGTGGCAACAGAAACCTTTCAACCCAAACCCAACGGGCCGCACAACCTGTTGCTAGGCGGATATCCTAACATAGATCACGACATAGACTACCCACGACACCAATCCAGCACTTTCCCACTTTCTCCATGCAGGGAAAACAATGAAAAGGTTTCTATCACTATTAGTCCAATGGAATCCCAAGGATTTCTCTCACAGGGAGGACGAGCCACATCCACACGGAGGAATTCTGTCCCCCAGTCAGTGGAGCAACAAGCCATGAGGAACTCGTGGCTCACCCAATCAGGAGAGGAGGCTTTAGTGGAATCACGGAGGTTTTCTCGGAAGCTGAATTCACCACGGTTACGCAGGAGAAGGCCAATAAACATTGAGCAGACTGCTGCCcctcagatgtcacaaagtggaTCTGACAGCTCTGGGATGGCCCAGTCTGAACCACACACAAACTCTTCCTCCAACTCTGATTCAGACTGCAACCAGAAACTCAGGGGTTCCTACCAACACAACTCAGGTTCCTCCGGACAGAGCTCTGACTCTCACCTGGTGCTCAAGCTGGGGTCCTTGAAGATGAACGGAGGGGTGTTCTGGGACATGCCTGCAGAGAGAGAGTCCTCCCCAGAGCCCCACGCTTTCTCTAGGCCAGAGCTGCCTAAAGCCATCCCAGAAGAAAAAGAAAACACCCCAAAAAGCACTAAGTTGAAGACCCAGAGGAGCACGTCCATACCAGATATCAGCTTCCAAGGAGGATATAATTCTCTTCTGACCTCAGCCAAGCCCTCCAACGCGCGAATagcccactctccccctcctggGTTGGATCCATACTTGCACCCCTCCCCTCTGGAGAGCATTTTGAACCGGGCCAAGGAGAGAagaaaggacagagggagaagagagggacaggggaaaTCTCCAACCTTCAGAACATGGGCTCTTCCTCCTTCTCCGTCTTTCTCCACCACTCCGTCCCAGTCGCCCAGTgaaggggatagagagactgAGTGGGAAGAGGTGGAGCTGGTCAGACGGCTGGCCCccagatggatagaggagagggtggaCGGAGATGAGGAGAAGAAGAGCAGCCCCGCCTTCCCTGATGGCACCAGCGTTGATTGGGCAGGCTGGTGCTTTGAAGCCGATGAGGTCCTGGATCAGCTGACCCCAGAGGACAGTTGCGTTGGGGTTGATGAGGAGTGGTGGGAAGCGGCTGAGGTGGGGCTCAGCCAAACTTTGACCTTGAGAGACTTCCAGCGAATCGGCACGCATGAGGACGGGACGATTAGTCAGGTGTAGTTCTGCATAGGGTACTGGGAGTCCTTCATTCTCCAAGACTTTATCTGCACTTTATGGGGAATAATATGTCATTTGAGATTTTCACTGTGCCGGAGTAGACATATAACAACGTGATACTTTTCCACAGCAAGATGTTGATTGAGTGAGCTGATTGACACCAAATGTTGAATTTCAGTTTGTTGCATGGAATGTTTGTGAGTGATTTGGAGTTTGTGATTATGAGTCTGAGTGAACATCAGAATCATTTTCTTCAACCTGCATAATATTGTTagagctacagatgtaggatcttcatttgatccctcttttgttgctgaggTTTTTCCTGCAACGCTGGAAATGCAGATaagctttgtgatttacataaatgtactgaaaacccacaccaacacatggttatattaacaatattgcacttttcatgtagcctacttttggctgatcaagcaacattatggactaattgttcaaatcctgttgctgtagcattattaagatcctacatctgtagacgcCTGTACTGTCTTATACACGTGTACTTTTTTGATGTTTTGTCAGTTAAGTGAAATGCTCTACATACTGCACATACATGTTTCATTGAACTTAATTTGAGTTGTTAATTTATAAGAGTAACTGCATATTTGGTATTGTGACCCATTGGGGAGATTCATACTGATACATTGtaataaagagagagatttaAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256291 lncRNA upstream 9142 11751714 ~ 11751899 (+) True G224177
TU256278 lncRNA upstream 59686 11701052 ~ 11701355 (+) True G224167
TU256276 lncRNA upstream 64316 11696494 ~ 11696725 (+) True G224165
TU256274 lncRNA upstream 67018 11693823 ~ 11694023 (+) True G224163
TU256249 lncRNA upstream 141929 11618687 ~ 11619112 (+) True G224138
TU256298 lncRNA downstream 717 11776750 ~ 11777501 (+) True G224183
TU256300 lncRNA downstream 1756 11777789 ~ 11778204 (+) True G224184
TU256308 lncRNA downstream 9454 11785487 ~ 11836170 (+) True G224189
TU256287 lncRNA downstream 18349 11794382 ~ 11808043 (+) True LOC110509655
TU256320 lncRNA downstream 32715 11808748 ~ 11809478 (+) True G224197
XM_021590458.2 mRNA upstream 13120 11738050 ~ 11747921 (+) False LOC110509537
XM_036969058.1 mRNA upstream 14475 11737950 ~ 11746566 (+) False LOC110509537
XM_036969055.1 mRNA upstream 14475 11738465 ~ 11746566 (+) True LOC110509537
XM_021590506.2 mRNA upstream 33787 11708849 ~ 11727254 (+) True LOC110509555
XR_005040921.1 mRNA upstream 52790 11683066 ~ 11708251 (+) False iffo1b
XM_021590639.2 mRNA downstream 12459 11788492 ~ 11790660 (+) False mrpl51
XM_021590647.2 mRNA downstream 12468 11788501 ~ 11790660 (+) False mrpl51
XM_036969127.1 mRNA downstream 15197 11791230 ~ 11808120 (+) False LOC110509655
XM_036963089.1 mRNA downstream 61850 11837883 ~ 11858967 (+) False tnfr
XM_036963099.1 mRNA downstream 61852 11837885 ~ 11858967 (+) False tnfr
TU256224 other upstream 170697 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 324581 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 369079 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 586678 11167009 ~ 11174363 (+) True LOC110509074
TU255730 other upstream 717349 11041848 ~ 11043692 (+) True G223748
TU256282 other downstream 12496 11788529 ~ 11790639 (+) True mrpl51
TU256420 other downstream 238475 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 244932 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 483288 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 577793 12353826 ~ 12354319 (+) True LOC110509826

Expression Profile