RNA id: TU257132


Basic Information

Item Value
RNA id TU257132
length 362
RNA type TUCP
GC content 0.40
exon number 2
gene id LOC110509592
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11808113 ~ 11811663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTCATGTGTGACATAGTGTGCACACTATTCACATCTAAATACGAAGTCTCTCTGTCTTCAGAACCTcctcatgtttctctctctgaggaGAAGCTGGTATTTCGGGATGAGTTGCCCCAGAAACTGAGCTGCCACTGCAAGAACTACTACCCTCTGGATGTCCAGatGGAGTGGTTCTCCGTCTCCTCTACAGACTCAGAGCCAGGCGTTCTATCAGACCAGGTGTCTCCTCTCCAGCCATCGGCAGCACAGCGACAGGACCATGTCCATCTCCTCCCACCTCACCCTGCACCCCTCCACCTTCCCCCCTGGAACCACGGTCACCTGCAGAGTGACCCACCCGGCCCTGGACACACCCC

Function

GO:

id name namespace
GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257117 lncRNA downstream 687 11806137 ~ 11808096 (-) True G224870
TU257123 lncRNA downstream 27056 11781410 ~ 11781727 (-) True G224874
TU257110 lncRNA downstream 55103 11752851 ~ 11753680 (-) False G224869
TU257108 lncRNA downstream 55993 11752418 ~ 11752790 (-) True G224868
TU257107 lncRNA downstream 58031 11750053 ~ 11750752 (-) True G224867
TU257153 lncRNA upstream 7714 11817060 ~ 11819210 (-) True G224899
TU257173 lncRNA upstream 54464 11863810 ~ 11865070 (-) True G224918
TU257174 lncRNA upstream 56016 11865362 ~ 11865765 (-) True G224919
TU257175 lncRNA upstream 56591 11865937 ~ 11866284 (-) True G224920
TU257186 lncRNA upstream 81746 11891092 ~ 11897894 (-) True G224931
XM_021590439.2 mRNA downstream 29515 11776055 ~ 11779268 (-) True LOC110509520
XM_036969079.1 mRNA downstream 70727 11727284 ~ 11738056 (-) False LOC110509576
XM_036969085.1 mRNA downstream 70727 11727284 ~ 11738056 (-) False LOC110509576
XM_036969073.1 mRNA downstream 70748 11727284 ~ 11738035 (-) False LOC110509576
XM_021590547.2 mRNA downstream 70933 11727284 ~ 11737850 (-) False LOC110509576
NM_001124380.1 mRNA upstream 10267 11819613 ~ 11825101 (-) True c1r
XM_036969159.1 mRNA upstream 49372 11858718 ~ 11862407 (-) False LOC110509614
XM_036969155.1 mRNA upstream 49391 11858737 ~ 11862403 (-) True LOC110509614
XM_021590419.2 mRNA upstream 53643 11862989 ~ 11889084 (-) False LOC110509511
XM_036969153.1 mRNA upstream 53643 11862989 ~ 11889594 (-) False LOC110509511
TU257122 other downstream 12474 11795890 ~ 11796309 (-) True G224873
TU257113 other downstream 55103 11752851 ~ 11753680 (-) False G224869
TU257114 other downstream 55103 11752851 ~ 11753680 (-) False G224869
TU257115 other downstream 55103 11752851 ~ 11753680 (-) True G224869
TU257101 other downstream 67199 11727362 ~ 11741584 (-) True LOC110509576
TU257215 other upstream 205580 12014926 ~ 12016101 (-) True G224954
TU257266 other upstream 261941 12071287 ~ 12081233 (-) True G224988
TU257419 other upstream 526895 12336241 ~ 12340966 (-) True G225099
TU257449 other upstream 645042 12454388 ~ 12457791 (-) True G225127
TU257501 other upstream 662953 12472299 ~ 12473060 (-) True G225171

Expression Profile