RNA id: XM_036963099.1


Basic Information

Item Value
RNA id XM_036963099.1
length 2544
RNA type mRNA
GC content 0.44
exon number 7
gene id tnfr
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11837883 ~ 11858967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtattgtgtgccACATCTGGACATACTGATCTGGAGACAGTGCCAAAAGCAGCCTCTAGAATCCTCCTCTCTGCAGCTAGTTTACACGGCCCAGAACAGTGCACCTCGtgccagagagggagggcaggaaggaaagggaggagagagagagacgcacagggCAGATGAGGGGCATCGGGGCTTTCCGTTCTGGAGGATAAGCGAGGGGGAAAGAggtgggtgagagaggagaggaagcagcTCTATATTCTCACTGAGAGGACGGAGGACACAGCGGAGGAGAAGACAAAGAGTGAGTGATACTTCAGCGGAAGAAAGAAGtcaaagtcagaaatagtgatagagaagaaggagagagagctagagacagagaggcGGAGTGTGAAAGGATATACATTCAACTGAGACCAGTGGATCAACAACATGAATGGTGAAGAAGAATGTTTTACTTGAATAGTAACGATTTTACAGAGAAGAATTACTGAAAAACACAAACTTTATGATAGAGTCAACATTTTAACAAAGATACTATCATCAAATGGACAAGAGATGGCTGAATTGGAATGCAAAACTGAGGAATACCTTCATGATGCTTCTGGGGTGAAAAGGTGCTGTGAGCGTTGTcgtaaagGACAGTATGTTCGCACCGACTGTGGCAAGTCTACAAAAACAGAGTGTGAAACCTGTCAACATGAATACTACACTGCTGAATTAAACTTCTTGAAACAATGTCTACCCTGTAGGGTCTGCTATTCCaCCAACCCCCAGAATGACACAGTCTGTGCCCCGTGCCAACCTGGGACCTATAACAGCTTCAACGATGCCTTCACACACTGCCAATCACACACCAGGTGTGGGGACCTCGGGAAGGAGGTGAAAAGTGCTGGGACTGAGACTACCGATGCTGTGTGTGGTGCCTTCATATCTCGGTGTCACTGGATACTACCTACCAGTCTGTGGGCAGGACTAGTGGTGACCTCACTCATCATAATCTTGATCTGCATCTATTGGAGGGCCAAGCGTCAATCATACATGCCAGccaACTCCAGTAGTCCTGGTATTCCTGTAGAGCCTGCACCTCCTTCCTTCGCACCAGCTGAGCTCAAGTTCCCCACCGAGTGCAACAGCCATTGGAGCCTGGACCAGAAAGCCACTGAGCCACTCTTCATCAACACAGCTGTTATTCAGGTAAACGGCTATACGTCAGACTGTGAAGTTGAGGCCGATGGCACCACCATAACAATGACAACATCAGAGCGATTCAGCCAATCGGATCACAGTAATGGAATGAGAGGACATGACATCAGACCCTCCCGCTACCTATCAGAGCCACAGGAAGATGAGTGGCCAGGGACTTAATTCTGATTTTCAACTAAATATTCCTTTTTTAATTACTTTTTTCAATGAACAAGACCCACATGGGAAAAAAAACTGAGCAGATTCCTCCTTGAAGGTTCCTGGATACAATCCCTTTTGTAAAGTCTTATCTCTGCAATGCAAATATACTGAACATCCTAGGAACATTCTTTGTTTCTTAGGTCATTGAAAAAAACTGTTGGGGAGGGCTTAAATAAAGTGTAATCAATGAGTTCAAATGTCGTCATAGCTTCTCCATTTTACATTTTTCTAAGGAACTTTCAAAGCCCAGGGCAGCTGGAATTCCCCTAACGTGTTGTCATCAGTAGCTTGATATGAACATCACTGTGGTGGAAAAGAGATTGTTGAAGTAGATGTATATAGATAGATATTCATTTTGACATCACAGCATCTGTTCAATGATGTTTTAACCACAGCATTGAAAATTCTGTCAAAACAGTTGACGCTTTAGCAAAGTGCAGAATCTAAATGTAGACAACACCCGAGTGGACACTGCTTAATTAAGTGTTTGTCGCCCCCTGTAGGATAGGAGTAGCAGCGGCTACCATACTTCAAACTGCTTTACCCTGCCCTCTAGTGTTATCAGCTAGCATTTACAGCTAAATGCAGGCCAACTGAAATCAGTTGCGGACTGCTTTCACACAGGCAGCCAAGTCTGATATTTTTTTTCCATTGGTCTTTTGACAAATAACAGATATTTTTCGGAGCTGAtcggattggtcaaaagaccaattagtaaaacaaaaagatccgaattgggctgcctgtgtaaacgcagccctTTAGGCACAGACCAAGGGTAAGCACACCTTCCCCAATAACTAAACCAATGGGAGTGAAAAACGCTGAACTGACGTTCGATCACAGcatacacataaatacacattGAAGGGAAGAGTTAGAACATGGGTACCATAAAGAGGCAACATCTGTATTTGTAGTGTGGAGCATCAGGTGGTATATTTGGACACAGAACAGCCACATTCAACACAAAGGGGAACATTCAATGGCATTGGGAACTATCGTAGTGATATATGAGGAAACACATTGGGAATGTTTACACAGTTCACCCTGCACTGTACCATGACAACATTCAAAACTGATCATTGACAATCTTTCCCACAGTGTAATAGCACACTAATTAAAAATATCTTAAATGTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256308 lncRNA upstream 1715 11785487 ~ 11836170 (+) True G224189
TU256320 lncRNA upstream 28407 11808748 ~ 11809478 (+) True G224197
TU256287 lncRNA upstream 29842 11794382 ~ 11808043 (+) True LOC110509655
TU256300 lncRNA upstream 59681 11777789 ~ 11778204 (+) True G224184
TU256298 lncRNA upstream 60384 11776750 ~ 11777501 (+) True G224183
TU256350 lncRNA downstream 50064 11909031 ~ 11909554 (+) True G224225
TU256365 lncRNA downstream 68509 11927476 ~ 11984929 (+) False LOC110509582
TU256366 lncRNA downstream 68509 11927476 ~ 11985113 (+) True LOC110509582
TU256397 lncRNA downstream 100325 11959292 ~ 11959895 (+) True G224267
TU256425 lncRNA downstream 157500 12016467 ~ 12016767 (+) True G224294
XM_036969127.1 mRNA upstream 29765 11791230 ~ 11808120 (+) False LOC110509655
XM_021590639.2 mRNA upstream 47225 11788492 ~ 11790660 (+) False mrpl51
XM_021590647.2 mRNA upstream 47225 11788501 ~ 11790660 (+) False mrpl51
XM_036969103.1 mRNA upstream 61852 11754136 ~ 11776033 (+) False LOC118936286
XM_021590471.2 mRNA downstream 98805 11957772 ~ 11966128 (+) True LOC110509543
XM_021590558.2 mRNA downstream 121340 11980307 ~ 11985113 (+) False LOC110509582
XM_021590568.2 mRNA downstream 121377 11980344 ~ 11984150 (+) False LOC110509582
XM_036969197.1 mRNA downstream 128286 11987253 ~ 12004723 (+) True LOC110509600
XM_036969205.1 mRNA downstream 146302 12005269 ~ 12053650 (+) False LOC110537447
TU256282 other upstream 47246 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 247541 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 401425 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 445923 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 663522 11167009 ~ 11174363 (+) True LOC110509074
TU256420 other downstream 155541 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 161998 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 400354 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 494859 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 510024 12368991 ~ 12381824 (+) True LOC110503596

Expression Profile