RNA id: XM_021590558.2


Basic Information

Item Value
RNA id XM_021590558.2
length 2833
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110509582
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11927476 ~ 11985113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccccttttttttattGACATTTCGCTTAATTCTAGCTTGCGGGCTACAGGCGTTTTGCAGGGTCATTTGTTTTTTATTCGGTGACATTTAGCACCACGGCTTCTGAACGGATAGGTGCTTGTTTTGCACAAAATATAGGCGTTTGTAGGTGTCAGGTTGTTGGAAAATTGTGGAGACATCAACATCTTTCTTCCTTTGGATTCCTGACGTTTTGGCTTCCTTTGTCAGCTTGACTTCCGTTTTCATGTGCAATCAACAGTGGAaaaatagctagttagctatcttgCTAGGAAAACCCTAGTCAATGTTTTAAGTTGTACTTAGGCGTGAACCATATAAGACTTGCTTCTGCAAATACGTCTGCTTTAAGAGGCTAATTTCCTACGTTGGTTTGCAAGCTAGTTTTCAGGCTAGTTTCCTTACACGGATGCTAGGTGGCTAGCAAggatagctagcttgctaacaatACTGCTGCACATTTCTCACTATTGTCCGTCGGTACGCTGTACTAGAAGTGTCGAAATACCTGAATGAGAGGTCGTAAACTTCCTGTCCTCTTACATTATTTTTTGTACTGAGGCCCCAAGAAACTACGTTTTTAGCTAGCCCCAGCTAGCTTAATTAGCTAACCAAAACACCATGTTTCGATATTTAAATGACGTGGATGACAACCCTTACATGATGGATCCATTTGCAGCCCAGAGGCAACAGATGAGGAGTCTGTTTGGGTCGTTTGGCTATGAACCTTTCCCCCTCAGCCCTCAGATTCAGCCTCCCCGTGCACCCCACCttcagGCTGGAGCCCTGCAGCCGTTTGGAATGATGGGAATGGGGGGAGGCTTCATGGACATGTTTGGGATGATGGGAGGAATGATGGAGAACATGGACAGAATGTCTGGTTCGCCAAACTGTCAGACGTTCTCTTCCTCCACAGTcatctcctactcctcctcagacatGGGAGCCCCTAAAGTCTACCAGCAGACCAGCGAACTGAGGACTGCACCTGGGGGGATTCGTGAGACGCGCCAATCGATGCGTGACAGCGAGAGCGGCTTGGAGCGCCTGGCCATTGGCCACCACATCTGGGACCGCGGTCACGTGATGGAACGCTCCCGAAACCGCCACACGGGTGACCGCGAAGAACGGCAGGACTACATCAACCTGGAGGAGAgTGAGGCTACTGCCTTCGATGAGGAGTGGAGGAGCACAGCCGGAAGGTACCCTCCCCCAAACGCACGGGGGATAGACTACGGACGGGACAGGAGGGCAGGGGGCCAACAGCTGGCCCTCGCCGCCCCACCCAGCTCCTCGTCTCCGCCCGCCCCTCGCCATGAGTCTCCCAGACACCTCCCACCCGCAACTCGCCCCCGCTACGACTGGGGTCAAGGGTGAAAGGTGAgcagaaggatggaggagaggataccGAGGGGACCTGCCTGATGCTGTGAAtgaagaagggagaagagggtCACGACTGACCGTCAAGATGTTTGATATGATGGGACTGTCTATATATAAACTAtacatttaacacacacacacacacatcagaaccCAACACACTCAATACCCGCAATTATGGTTCAACCTATCTGCTGTTACCGTTCACATACACACGTGCggacacatgtacacacatgatTACACACATTCAAGTTGTATATAGAGCCACCCTCCAACTTTACATGCGTTAATTTCCCACCtcactatataaatatatataaattgccacactacatactacacatgTGCTGTACAGTCCATATATGTTTGTGTAGACACTAGTGTGTCTGTGAATTGAATTGTATACTGTTGACTAATTAAAATAATTAATGAAAACGAACATTAAATATTGTTAGATAATTGcacactgtgttgttgtttgtcatGGAATAGTGAGTGGATGGGTTATGTTTTTAGAACAGGTTTTGACCTGATGAGGACTGCCATTACTGGTACAGGAGAAATGGAGTTTGCTGGTGTTTTTCTGTCTTAATACAGTCACTTGTCTGACATCCCATTTCCATGTAGGGAAGTAAACTGACATTCCAACAATTTTCATTGTTGAAAAGCCATGAGAATTGGAATTTAAGTTTAATTCCCAAATAGGCACAATTGAAGtggaattgatcccaaccctggtgcATGTGAAAATGTTACTtggttgtattttatttttgctgTTGAATCTGTTCAATATTCAGCATGTCTTTCCATCCCAACACTTTGTTTCTATTATAAATGCCACGGTAAATAGTGTGTCCTATGGCACAGTCATCCCTTCATACATACTCCCTCACAAATAAACATTCGCATCCCTACACACACTCTCGTGTGTGTAAACTCGTGCTCTCACTATCTAGTGTCAGAATAGCTGCAGATGGTCATATGACATCCAGATGGAACACACCAGAGAAGAAGCCAATCAAAATCCTCCCTGCCCTCTGCCCATTCTGTGGCACATTCCCCCTGGATttgtctcttcccccctctctcttccataaTTGTCACCTTCATCTCTGAGGTTCCATCTGTATTTTATAGCTGCCTTGTGTGCTTAATTCTCTATCGTTCTCTATCTTTCATCTCTGTATTCTGTTAAATGCTACCCATCACTAGTTAGTTGGCCCTGGCCTTcattcacatacagtgccttgcaaaatcaTTCAGAGCTTTTGGATTGCTTCACATTGTTACAAATTATAATTAGAATTGATTaatttaattgtctttttttgtTAATCTActcaaaatactctgtaatgtcaaagtggagagaaattcattttttttttaaagatgaataAAAATGTGATAACTAAAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256397 lncRNA upstream 20412 11959292 ~ 11959895 (+) True G224267
TU256350 lncRNA upstream 70753 11909031 ~ 11909554 (+) True G224225
TU256308 lncRNA upstream 144137 11785487 ~ 11836170 (+) True G224189
TU256320 lncRNA upstream 170829 11808748 ~ 11809478 (+) True G224197
TU256287 lncRNA upstream 172264 11794382 ~ 11808043 (+) True LOC110509655
TU256425 lncRNA downstream 31354 12016467 ~ 12016767 (+) True G224294
TU256426 lncRNA downstream 31794 12016907 ~ 12017156 (+) True G224295
TU256427 lncRNA downstream 34837 12019950 ~ 12020685 (+) True G224296
TU256447 lncRNA downstream 85103 12070216 ~ 12078021 (+) True G224308
TU256448 lncRNA downstream 99665 12084778 ~ 12088970 (+) True G224309
XM_021590471.2 mRNA upstream 14179 11957772 ~ 11966128 (+) True LOC110509543
XM_036963089.1 mRNA upstream 121340 11837883 ~ 11858967 (+) False tnfr
XM_036963099.1 mRNA upstream 121340 11837885 ~ 11858967 (+) False tnfr
NM_001124378.1 mRNA upstream 122287 11838112 ~ 11858020 (+) True tnfr
XM_036969127.1 mRNA upstream 172187 11791230 ~ 11808120 (+) False LOC110509655
XM_036969197.1 mRNA downstream 2140 11987253 ~ 12004723 (+) True LOC110509600
XM_036969205.1 mRNA downstream 20156 12005269 ~ 12053650 (+) False LOC110537447
XM_036969208.1 mRNA downstream 20575 12005688 ~ 12052709 (+) False LOC110537447
XM_036969203.1 mRNA downstream 20576 12005689 ~ 12053650 (+) False LOC110537447
XR_005040957.1 mRNA downstream 104788 12089901 ~ 12106492 (+) False LOC110509740
TU256282 other upstream 189668 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 389963 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 543847 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 588345 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 805944 11167009 ~ 11174363 (+) True LOC110509074
TU256420 other downstream 29395 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 35852 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 274208 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 368713 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 383878 12368991 ~ 12381824 (+) True LOC110503596

Expression Profile