RNA id: XM_021590568.2


Basic Information

Item Value
RNA id XM_021590568.2
length 1840
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110509582
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11927476 ~ 11985113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCGGGCTACAGGCGTTTTGCAGGGTCATTTGTTTTTTATTCGGTGACATTTAGCACCACGGCTTCTGAACGGATAGGTGCTTGTTTTGCACAAAATATAGGCGTTTGTAGGTGTCAGGTTGTTGGAAAATTGTGGAGACATCAACATCTTTCTTCCTTTGGATTCCTGACGTTTTGGCTTCCTTTGTCAGCTTGACTTCCGTTTTCATGTGCAATCAACAGTGGAaaaatagctagttagctatcttgCTAGGAAAACCCTAGTCAATGTTTTAAGTTGTACTTAGGCGTGAACCATATAAGACTTGCTTCTGCAAATACGTCTGCTTTAAGAGGCTAATTTCCTACGTTGGTTTGCAAGCTAGTTTTCAGGCTAGTTTCCTTACACGGATGCTAGGTGGCTAGCAAggatagctagcttgctaacaatACTGCTGCACATTTCTCACTATTGTCCGTCGGTACGCTGTACTAGAAGTGTCGAAATACCTGAATGAGAGGTCGTAAACTTCCTGTCCTCTTACATTATTTTTTGTACTGAGGCCCCAAGAAACTACGTTTTTAGCTAGCCCCAGCTAGCTTAATTAGCTAACCAAAACACCATGTTTCGATATTTAAATGACGTGGATGACAACCCTTACATGATGGATCCATTTGCAGCCCAGAGGCAACAGATGAGGAGTCTGTTTGGGTCGTTTGGCTATGAACCTTTCCCCCTCAGCCCTCAGATTCAGCCTCCCCGTGCACCCCACCttcagGCTGGAGCCCTGCAGCCGTTTGGAATGATGGGAATGGGGGGAGGCTTCATGGACATGTTTGGGATGATGGGAGGAATGATGGAGAACATGGACAGAATGTCTGGTTCGCCAAACTGTCAGACGTTCTCTTCCTCCACAGTcatctcctactcctcctcagacatGGGAGCCCCTAAAGTCTACCAGCAGACCAGCGAACTGAGGACTGCACCTGGGGGGATTCGTGAGACGCGCCAATCGATGCGTGACAGCGAGAGCGGCTTGGAGCGCCTGGCCATTGGCCACCACATCTGGGACCGCGGTCACGTGATGGAACGCTCCCGAAACCGCCACACGGGTGACCGCGAAGAACGGCAGGACTACATCAACCTGGAGGAGAgTGAGGCTACTGCCTTCGATGAGGAGTGGAGGAGCACAGCCGGAAGGTACCCTCCCCCAAACGCACGGGGGATAGACTACGGACGGGACAGGAGGGCAGGGGGCCAACAGCTGGCCCTCGCCGCCCCACCCAGCTCCTCGTCTCCGCCCGCCCCTCGCCATGAGTCTCCCAGACACCTCCCACCCGCAACTCGCCCCCGCTACGACTGGTGAGAGGGGTCAAGGGTGAAAGGTGAgcagaaggatggaggagaggataccGAGGGGACCTGCCTGATGCTGTGAAtgaagaagggagaagagggtCACGACTGACCGTCAAGATGTTTGATATGATGGGACTGTCTATATATAAACTAtacatttaacacacacacacacacatcagaaccCAACACACTCAATACCCGCAATTATGGTTCAACCTATCTGCTGTTACCGTTCACATACACACGTGCggacacatgtacacacatgatTACACACATTCAAGTTGTATATAGAGCCACCCTCCAACTTTACATGCGTTAATTTCCCACCtcactatataaatatatataaattgccacactacatactacacatgTGCTGTACAGTCCATATATGTTTGTGTAGACACTAGTGTGTCTGTGAATTGAATTGTATACTGTTGACTAATTAAAATAATTAATGAAAACGAACATTAAATATTGTTAGATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256397 lncRNA upstream 20449 11959292 ~ 11959895 (+) True G224267
TU256350 lncRNA upstream 70790 11909031 ~ 11909554 (+) True G224225
TU256308 lncRNA upstream 144174 11785487 ~ 11836170 (+) True G224189
TU256425 lncRNA downstream 32317 12016467 ~ 12016767 (+) True G224294
TU256426 lncRNA downstream 32757 12016907 ~ 12017156 (+) True G224295
TU256427 lncRNA downstream 35800 12019950 ~ 12020685 (+) True G224296
TU256447 lncRNA downstream 86066 12070216 ~ 12078021 (+) True G224308
TU256448 lncRNA downstream 100628 12084778 ~ 12088970 (+) True G224309
XM_021590471.2 mRNA upstream 14216 11957772 ~ 11966128 (+) True LOC110509543
XM_036963089.1 mRNA upstream 121377 11837883 ~ 11858967 (+) False tnfr
XM_036963099.1 mRNA upstream 121377 11837885 ~ 11858967 (+) False tnfr
NM_001124378.1 mRNA upstream 122324 11838112 ~ 11858020 (+) True tnfr
XM_036969127.1 mRNA upstream 172224 11791230 ~ 11808120 (+) False LOC110509655
XM_036969197.1 mRNA downstream 3103 11987253 ~ 12004723 (+) True LOC110509600
XM_036969205.1 mRNA downstream 21119 12005269 ~ 12053650 (+) False LOC110537447
XM_036969208.1 mRNA downstream 21538 12005688 ~ 12052709 (+) False LOC110537447
XM_036969203.1 mRNA downstream 21539 12005689 ~ 12053650 (+) False LOC110537447
XR_005040957.1 mRNA downstream 105751 12089901 ~ 12106492 (+) False LOC110509740
TU256282 other upstream 189705 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 390000 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 543884 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 588382 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 805981 11167009 ~ 11174363 (+) True LOC110509074
TU256420 other downstream 30358 12014508 ~ 12014805 (+) True LOC110537447
TU256429 other downstream 36815 12020965 ~ 12022444 (+) True G224297
TU256552 other downstream 275171 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 369676 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 384841 12368991 ~ 12381824 (+) True LOC110503596

Expression Profile