RNA id: XM_036969205.1


Basic Information

Item Value
RNA id XM_036969205.1
length 6335
RNA type mRNA
GC content 0.57
exon number 10
gene id LOC110537447
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12005269 ~ 12053650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACACAATAGGGGACGGGATAGGGGGCTGTGTAAAGGGGGAAGAAAAAACGAAAGGAGAGAGTAGGGAGGTGGTTTGCAGAACCGCTTGACTGATCACACTGTAGCTTGCTCCCCCGACTCTGTgcagagtaaaagagagaggtagaccgggagagggagagagaggtggaaggagaagaAACGGGGTAGGTCTCGGCCTAGGTTTTAGGGGAAAGGTTTATACACTCAAAGAAGAACTCCGTTCTAGGCATGAATAGAATGGACACGGAAACTTTGAGAATGCACTATTATCTAGGCTATAATGGCATTATTCAGTTCGATGCTCTTTGACTACACGTTGGGCTGCATGCTGTAGCCATTTGCCTATCAATACAATGACGGGGAGAAGTTTTAGAACAAAGGGAGAAAAGGTTGTAGAAGCTCAGATGGTGGTGAGGTGATTTTCAGTCCTACAGAGAAAGACAAGGACACCACTTCATTCACTGCTATGGCCTGTGGGGAGGGATGGACATCATAAAGGAGTAACGATGAAAACTCGAACTCACAAAGAATCGATGCCAATGCGCAGTGGGCGGAGGCGGGGGGGAAGCAacgaggagaggaggggtagacGCCCGCATCCCAGCCCTTCTCGTGCAGAACGAAACGACAGGCAGACGcaaagagctgctggcgaGGAATTGGCTGTCAGTCGCTTCAATCACAGATCGCAAGGCCATGATTCGTCAGAGAGTGAAGGGGAGGAACTTGTGCCTCCGCCAAAGAGGCAGAAAGTCCAGGATTCTTCCTCTGTCACCAACCCACCGACTTCAACTCATTCAACTGACAGTACTCCACCTACTATACCGCCCCCACCCTCGGCTCCCAGACAGTCACGTGACAGTGACAACGAGGATGGTCAATCCCAGGGCAGCAGGAGCTCAGTTGTAGGGAGCTTGGCCAATAGTCTGAGCAGTGGGCGGGACATCGACCAGGACAATCGATCTTCCTCCCCGAGTCTCTCTGCCTCGCCTCCAGCCAGTTTAGACTCTGACTCTGATGGTCCAGACTCACCAAAGCAAGGAGAGGGGGAACgggagaaaaggaaagagggaggagtggggaagacaggaggagaggaaaggagagcagccagagaggggagaggggatgagtCTTGCGGGGATGGAGAAAGGAAGGatggaggaatagaggacagCCCTTCTCTGAAGCTGCCATCCTCCTCCATATCTTCCTCTgctcctgttccctctctccgcGGAGCAGGGGATTCAGCCAATGACAGCAATAGTTGCAGGAAGTCCTATTTCTCACAGGACTCCAAGCTGGTAAGCAAGATGGAGTATGGACCGGCCAGCGCTGACACTGTGCACAGTGGCAATCGAATGAACTCCAAAGCTAAAGCTCAGTGCGTGACCAAGGCAACTGTCGCCGGGGGAGACTATCCCCACGGCAACCCCAACATTCCAcacccccctccaccaccccttcctcctccaccagcACTGAAACCCTTAGAACTAGGGGGGCAGAACCTGCCCTCAGAAgtcaaggtagagagagagaaaatggagaaAGGTGAGAAACTGATGGACAACAAGAcggctcctccctctctgttacccCAAACCAGCCCATTACCCCCCTCCCAGCCCCCgccccacccccaccactacagccCCACCGGATGGCAGGGAGGCACCGCAACCGGTTGCCAGGGGAGCTGGGGCTACACCCGTTACTCTGGTAACCACCACGCTCACCAGCCGCAGCACCAACCCCCAGTGCAGCAGCAGCAACTGCCATCCGTCTACAACCCCCCTTCCTCCCGTCATTCGTCCTCCTCCCACCCCCCTTACCTCCCCCACCCCCACAAGGAGTACCTCCCCAGGTACGCTTCtgggggaggggaaagggagaggggggcggccggcgagagggagagggggggagtgagggTGGAGTATGGGGGGAGGGAGATAGGTAGGGATTTCTCggctagtagtggtagtaacagcaGCACTTCTGGTGGGATGGGGGGTCCTAATGGGGTCCAAGGGAGGGAGTTTGTGGGTCAGAACCGGGAGTACCCAGGCCTGGGACCTCAGGGCTCTGTGAGAGACCCCCCCATGGGTCCTGGGGGAAGAGAATTTGGACCGGGGGtgttcagagaaagagagagggagagggagggagagagggatgtaggagGAAGGGAGTTTCCTTTACAGAAACGTAATGAGAATCAGAACAGAGAGTTTGGACCCACCGGTGCTGGGGGAGGAAGGGGGCACCCGAGAGACAAAGAGGGGGGGCGGTGGGGCGAGTTTGGAGGCCAGATGAGAGAGGTGGGGGGCAATGGTAACCCCAATAATAACCCCCTCCCCCTAGGAAACCCCTCAAGCTCGACCAGTGGGTTACCTGCAGCCCCCATGCTAAACCGCGACCCCCCTTCCTCACCCCAAAACAACCCCAgccaccctaccctacccccccACCCACATCCTCAAAGCGCCTCCAAACGAGACTACCCCCCATCGATGGACCAGGGACAGACAAGGCACAGTCCCCCCCCTGGACCAGAACACTTCCACAGAGAGTACCCTCCTGGGGCCAAGGACTATCCCCCTGGTGGCCCACCCTCCACCGGCCCGGCCCGTGAGTACCCCAGTCCTCCCGGAATGACTCCAAACCTGGGCCGAGACTACCCAGGTGGACCTCAGATCCCCCACTTGCCCCACCCCCACTTTCCAGCCCAGCAGCCCAGAGACAGGGACCGAGAGAGGGACACCAACCAGCGAGAGTCGTCTCTCTACCAAAACCGTGGCGGTCCCCCCCAACCcccgtctctttctccctcctcttcctcctccactcctcatgGACACCCTCCGAATGCTCCTTACCCTCCTCcgccacctcctccccctctcccccctccccaaaCCTCCCTCGCTCAGCCCCAACCCCCCTCCGGCCTGGGACCCAATCACGTTCGTCCGGCAAATTATTCTTCCTCCAATCAGACTCCTACAACACCCCTCTCTCCTTTACTAAGCCCCTCAACCAATCAGATGGGAGGGTTTCCTTCCTACCCGCCAGGCTCCTCCTCCGGGGCCAACATGTCACTTCCTGGTTCAGGTGTGTCACCTGGCTGTCGGCCCTCACCTTTTCACAGCACTTTGAACAGCCACGCCCCCTTCAGCAGCCCCTACCACTCCAATGGGAACAGTGGGAACAACCTGGTCCCGACTAACAGCaatagtaacagtagcagtggcagcagccataccaactctctctctcagtccctctcacCTCAAAACGCCTCAAAAGGACCCCCACCTCTTAGTAACCCCGGCAACAACAATGGCACTTCGGCCCCTGGCTGTAGCGCCTCACTTCCTAGAGATGGGCATTCTGATTCGTCCACAGGTCCACCTCCCCCACCTGTCATCAAGGAGGAAccaatagaggagagggaggagagtgaaagCCCACCTCCTGTTTTGAGAAGCCCCTCCCCTGAGCCCAAGCCGGTGGACATTCCGATCCACGCTAGCCAATCAGCACGGTTCCACAGGGTTCTAGATCGGGGCAGTGGAAACTCCTGCGCCCGCAGCGACGTTCTCTTTGTCCCCCTGGACGGCTCCAAACTGTGGAAGAAGAGGAACGAGGTGATCGAGAGAGCCCGGAGAGAGGTGGAGCAGAGGGCCAGAGACCTGAGGGAGAAAGAGcgggaacgagagagggagagagagagggagcgggaccTGGAGAGGCATCTACAACAACAGAAGGACAATAACAATGGAAATATACAACGCCAGggatcctctctcttcttcccctcctcctccatcctcctcgaCCCTAACTCCTCTTCTTCTAACCCTGGGTCTCACCCTCAACCTCACCCCCAGCAGCACCACTCCCACCCTCACCCCCACGCTCACCTCCACCACTcccacctccacccctccctctctcaacacATCCCACACTCCCTCCTCATGCAGTCAATGGGGGGTTCAACGGTGGTTGGCCCACAGGGGGCTCTGGGGATCGGGTTAGGAGGGCCGTACCTGGGCCCTGACACCCCCGCACTGCGGACCCTGAGCGAGTACGCCCGGCCCCACGCCATGTCCCCCCTCGGGGCTAGTCGCCAACACCAACACCCACATGTCCACCATCATGGCCACCCTCATGGCCACCCCCATgtccacccctccttcttcctcccCCAGTTCCAGAACCATGCTCTGGCCCACCCACATCACATGCCTGCTGATGCAGCCACAGCGGCAGCCATCTTGGGTTTCCTCTATGGGGGCAGTATGGAGGGAGGGCCAGGGGGACATGGAGGAGGACATGGGGGGATGGGGGGTGCAGGGTTAGGGGGGATGGGGTTTCCCCATGCAGTGGCAGCCCACCGTGAGCGCATGAAGCCGGGGTTTGAGTTTAAGAGTGAGGACAGGGTGTACCAGCCAGGCTCCTTGGGAGATCCTACGGCTCTCGCCCTCGCCCACTCCCACTCGCATGCCCACGCACACGCTCATGCACATGCTCACTCCCTACtgctggggggagggggtggaggtgagGTGGCCATTTATGGCACCCCCCCTCCCCAGgctcctccacccccaccaccGCCCCTCCAGAACCCAGCGTTAGCCCCAGTGAGTCGCCTCCCTAACCCTCCTCCCGCCCCTCAgtccctctccaaccctccccccttctccctgcTTCCTCCCTCGCTACCCTCTCACCCTGCACCTGCACCAGCCCCTCCACCCCCAGTCCCGGTAGCTGCACCTCTgcccactcctcctccaccctcctctaaccctgtttcatccctccatcacccCGCAACGCACTCCTTTCCCagctccctccccccatctcacCCCCCACCTGCCCCGGCCCCGGTGACCGCCCCTCCCGAGACCTACCCCCCTCTCACTCGCTCCCCCACcacatctgagagagagaggagtggagagagggagagagaaagagagcgagacagagcgggGCTGCCAGCCggtggagagaggggacgagagagggagagggagcgagagagagaaagagaaagagggggaagcaATGGAAGTGGAGGAAGTGgtggaagtggaggaggaggaacaggaggagagatTCCGGGGCGTCTTCAGATGTTGAACGTCACGCCTCATCATCACCAGCACTCACACATCCACTCCCACCTGCACCTGCACCAGCAAGACACAGCGGCGGGCGGGGTGCACCCCCTGATGGACCCATTGGCGTCGGGGTCTCCCCTGGCCCGCCTGCCCTACCCAGGGGCAGCGCTGGGCACCCCCATCCTGGCACACCCCCTCACTGAAAGCGAGGTGCTACGACAACAACTCTTCGGAGCTCCGTTCCGTGAGCtgccccagccctcctctctgacAGGTTCCATGTCAGCGGCCCACCAGCTCCAGGCCATGCAGCAGGCCCAGAGCGCAGAGCTGCAGATCCAGAGACTGGCCCTGGAACAGCAGTggatccaccaccaccaccatcactcccTCACCCAGGACGAGTACTACAGCCACTTAAAGAAGGAAAGCGACAAGACCCTGTaagggaggaaacagagagggggaacaAGCCCACGGAAGACAAAGAAATATCTGCAAAGGAAGAAGAAAACACCAAAACAGAAGCACTAAGAACATTGAAGGAAGCATCAAACCATAGGAACCTGAGGAGAAATGAACTGATTGGGAAACCAGATGacaaaagggagagagggatgagaggagtgaAAACGTTGCTCACAGTCTGTGTTGTCTGTACTATACCATAGCCCCAGACTCTGGGCGCATCACAGCGTATGTGTTTCAACTCCACTTTTGTATTGTGCCCTGTACAGTATACTAGGTGGGAGCAGCAATATAATGCAGTACAGTCTGGTGTAAATGACCTTATGCCAGGAAGAATGTGTACATGAGGCTCTCTTTTATGTCATTGCATGTAGCTAGGCGCTTATTCTGAACTGGTTGAACTCCTGGTTGTATTTTTAGAGATCGCCCTCTCTTTCCTAACGAACGGGTGGTGTATGAGTATGCATGAGACCAGCGATTAAGAAGTGTCATATTATGTTAACGATTAgttgtattgttattattattcatGTCTGTTTGTTGATAATTGTATAATTCTATATACATATTAtttgtattgttattttattacattttcatgGTATGGCGGTttctttagttttttttattgtgaaacgaGATGCAAATGAAGGAAAAAGACAGAAGATAAACTACATCACTTTTGGGGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256366 lncRNA upstream 20156 11927476 ~ 11985113 (+) True LOC110509582
TU256365 lncRNA upstream 20340 11927476 ~ 11984929 (+) False LOC110509582
TU256397 lncRNA upstream 45374 11959292 ~ 11959895 (+) True G224267
TU256350 lncRNA upstream 95715 11909031 ~ 11909554 (+) True G224225
TU256320 lncRNA upstream 195791 11808748 ~ 11809478 (+) True G224197
TU256447 lncRNA downstream 16566 12070216 ~ 12078021 (+) True G224308
TU256448 lncRNA downstream 31128 12084778 ~ 12088970 (+) True G224309
TU256442 lncRNA downstream 45812 12099462 ~ 12103188 (+) False G224307
TU256439 lncRNA downstream 50462 12104112 ~ 12108376 (+) False G224307
TU256446 lncRNA downstream 50462 12104112 ~ 12108376 (+) True G224307
XM_036969197.1 mRNA upstream 546 11987253 ~ 12004723 (+) True LOC110509600
XM_021590558.2 mRNA upstream 20156 11980307 ~ 11985113 (+) False LOC110509582
XM_021590568.2 mRNA upstream 21119 11980344 ~ 11984150 (+) False LOC110509582
XM_021590471.2 mRNA upstream 39141 11957772 ~ 11966128 (+) True LOC110509543
XM_036963089.1 mRNA upstream 146302 11837883 ~ 11858967 (+) False tnfr
XR_005040957.1 mRNA downstream 36251 12089901 ~ 12106492 (+) False LOC110509740
XR_005040958.1 mRNA downstream 36251 12089901 ~ 12106492 (+) False LOC110509740
XR_005040960.1 mRNA downstream 36251 12089901 ~ 12106492 (+) False LOC110509740
XR_005040962.1 mRNA downstream 36251 12089901 ~ 12106492 (+) False LOC110509740
XM_036969285.1 mRNA downstream 36251 12089901 ~ 12108140 (+) False LOC110509740
TU256282 other upstream 214630 11788529 ~ 11790639 (+) True mrpl51
TU256224 other upstream 414925 11580782 ~ 11590344 (+) True LOC110520911
TU256146 other upstream 568809 11433120 ~ 11436460 (+) True G224052
TU256123 other upstream 613307 11391333 ~ 11391962 (+) True G224035
TU255809 other upstream 830906 11167009 ~ 11174363 (+) True LOC110509074
TU256552 other downstream 205671 12259321 ~ 12326075 (+) False LOC110509826
TU256553 other downstream 300176 12353826 ~ 12354319 (+) True LOC110509826
TU256555 other downstream 315341 12368991 ~ 12381824 (+) True LOC110503596
TU256720 other downstream 606970 12660620 ~ 12661167 (+) True grik5
TU257885 other downstream 912382 12966032 ~ 12966533 (+) True G225451

Expression Profile