RNA id: XM_036969319.1


Basic Information

Item Value
RNA id XM_036969319.1
length 10357
RNA type mRNA
GC content 0.57
exon number 21
gene id LOC110503596
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12368841 ~ 12430981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTAACGCTGGTAGGCTACTGTACCTGTCAGAGATCTGTGATTGGTCAGAGAGGCCAGCTGTTAGTGGTTCATTCACCATTTTGAGACTGTAGTGGAAAAGGGACCCAGatcttaattattattttttttatccctgGTTGAGTTGCTctgggaaaaatacatgttttacgGAGGGAAATTAAAGCGAGAGCTCGGACCACACAGTAGCAACGGCCAGCCGAGGGATGTTACCCTCGAGCGTGCAAGCTTCCTCATCTGCAAAATAGGATCGTACATGTGTCTATTGCCAACTGAATTTTTCTGTTTGGtCTGAATTTCAGAGAAAAGAACAAGGAAGGAAAAGGGGCAGTGAAAAAGAGAGCAGAAGACCAGGGGGCGAACGGaacagaaagaagaagaagaaacaagaCGAGCCAAAGAAAGGAGAGCAACCGTCAGCACTCACCCCACAGAGTATAAAGGCAGAAAGGAAAAGACGAGGTGAAGAGATGAAGCCACTAAAGAGACAGAGGGGATGCTCTCCCCCCTACACGCGGGCCAaaggggggaagaagagaggggcgACAGAGACCCCCCCAGAGAGGGACAACAGGAACAAACTCAGGAAGGAGAACCAAGACGGACAGCCTCAATCCACGACCCCCGCCCACTTGCCACGGAAACAATCCACAACCTCCTCTGAAAGCTCTCAGCAGGAGCCAATCAGAGGCAGCGAGACCCCAAAGAAGGAGGGGCCTAGAGAGCAGGTGCCGCCAAGGCAACCTGAAGTTAAAGAGAAGACCAAGGACAGCAgagggggggttggggggaaacCAGGGGGGCCTAACAGTACCCCCACTTCCTCCCATAACAACACCCTCACCATCCCCACCCCCACTACCAGTCCCAGCCCTACCTCCATGTCCAGTAGAAAAACAGCCACCTTCAAGGCCAGAGTCCCCAAGAAGAAGTACATTGCTGAACACTATGCTGGTAGCAACACGCCCAGCCTCACCTTCACCCCTGCCCCCATGCACAACAGCCACAGTAACTAcagtagtactagcagtagtatTAACATCATCAACAGCAGTAGTACTAACAGTAATAACAATAGTAATACCATTAGTAACAGTAGTAGGACAAACACTACTATTAATGGTATTAACAGCATTAGTAACAGCCATAGTAGCAGCTCAGTCAGCCACTCATTAGCCCCCAGTGTGTccaatgaggagaggagggtagccGCTAGCAGCCACAGCCATGGCCCGGGGGAACAGGGGATGACAGGGGCCTCCATAGGGCCCAACAATGGCAGTGTGGCCCcccaggaaagagagagagacccccaGGGTggggagacagaggcagagggtgCCCCTAACTCAGTGCGCTCCGTATCCACGGATACAGCCAGCGAGCACGATCTGGAGGTGAACTCCCAGCCCAGTACCAGCCCTGCTAGAGCCCCCTACCAGGGCAGTCTGTCCGGGGCGGATGCCCTGGCCAAAGGCCTGAAGAACCAGAGAGTTCTAGCCCGCTGTCGAGGGAGAGACAGACTTAACGGAGAGcaaggtgggagggagagagagagggatggacccCTGTCTCCTATGTTCAGGGCTGGGGTGGTGCGGCGGGTGAGTGGGGGCAGCGCTGATATCCAGctgcagggggaggaggggatacTCTGTTACCCCTTTCAGGGGGGGACCGCACACTCGGGGGGGGAGGAGACGAGCGTGGAGTTCATCCTGGACGCCCCTCCACCCGGCACGGCGTCCGTGGCCATCGGGACACGCgtatgtgtgcctttcagagggggaggggggcgaGATGGGGGTGAACAGGGGACACCTCAGCTATACAGAGAAGGGGTGCTGTCCCAGGTAGACCCCCACCCTGCCGTGTCGTTCCCCTACAGGGTGCTACTGTGTGAGGATCTAGAGGCGctggagaatggagggagggaggaggagggagggatggaggagaagagggggagggcgCAGGCCCAGGCTGTATGGGTGTCCAGACAGAGCCTGAGGCTGCTGACTCCCCCCTGGGAAATGCCTCACCCAGGGGGGAgcgaaagggagagggagagagagagggaggagagggagaggagggaggagatggaggtggagagggaggtgtgCCAGCTGAGTATTGGGATGGCGCTGGGTGGGCCGATGGGAGGGGGGGTGAGGTTGGTGCATAGCTTCTCTCCagatggggtggtgggggggcATCACTATGGAAACGTCCCGCCCCACCCCTCCTCGTTGGTAACGACCAGCGTTGTCACCATCACTGGAGAGGGTTACCCTGACAGAGAGATAGAACAAGAGCGGGaacaagagagacagaaacagccCCAAACACCAGAGGAGGACATGGAGATGTCTAGGTTCACTATGGGCACCCAGCATCGCCACATCCTCTCCAAGCCCCTCCTCGGGGGGCACAGCTACCCCTCCTCCCAACACCTGGTCCAGGGCCTGGGCACGCCACTGGGCTCTCACCTGTCCTCCCTCACCTTGCCTGGCCCTGAGGCCCTGGGCATGACCCCCCCACCACACCTACCCCCTTCCAAGAGCACCCTGGTCCCCCTGGACAAGACCCCCTCCCAGATCCCCACCCCTACCCCTGGAGGGGGGTCTacctcctcctcagcctcctccTCGCGCTCCCGCACCCCCCTGTTGGCCGCCCTGCAGAAGTACAAGAAGGGGGACGTGGTGTGCACCCCTAACGGTATCCGCAAGAAGTTCAACGGCAAGCAGTGGAGACGCCTCTGTTCCAGAGAGGGCTGTATGAAGGAGTCCCAGAGACGAGGCTACTGCTCACGGCACCTCTCCATGAGAactaaagagatggagggagggggagagagggacagggggagaggagaaggggggagcAGTTCGGGGACGGTCACCCCCTCAGACCTGCGTGGGTTTGACTGGGATGAGACGTCCAGAGACAGCAGCGAGGCCAGCAGTAGAGGAGACTCCCGCCCTCGGCTGGTGCTGCCCTCCCTCCTACCCCATGACTTCTCCAGGTTTGACTTTGACGAGTGTGAGGCAGCAACCATGCTGGTGTCTCTGGGCAGCTCTCACTCTGGgaccccctccttctccccaatCTCCAACCAGTCCCCTTTCTCCCCTGCCccttctccctcaccctccccccTCTTCGGATTCCGTCCCGCCAACTTCTCCCCCATCACCGCCTCCTCCGTCCTCCCCCCTCCTCGCAGACACAGACACCCCAGTGCCACAGGGGGAAAGTTGGGCACCCctgggggggcagagagggagaggcataCCTCAGGGGTCCAGCCGTCCTTCCACACTAACCTGACCTTCACTGTCCCCATGAGCCCTAGCAAACGCAAAACAGAcgttccccctcctccctcctcccacccccACCACGACTACCCCCCCAAACCTGAGCTGGAGCAGGGGGACCTGAACCCTGCCTCGTTCCCCGTCCTCTCCCCCCAGACCCCAGCACACACCCACGCTTACACACCCACCTTCTCCGGTCCCCGAGGGCTGAGCACACCAACCAGCCGGCCCCCCTCCTCCCCCGccacctccccccctcccctcctggtGTCCCcaactcccccctcccctccagacTCAGGCCCCTGCCGTTTCCACCCCACATCCCAGCAGGCCTTGCGGGACTCTCCAGTGATCGTGCGGAACCCGGAGGTTCCTCTGGCCAAGTTCACAGAGCGTCCGTTAGgccgtgggggggggggagtaggtgAGCCTAAGAGTCTTAACAGCGttactccccagcctgtctccactctCCAAGTCCCTGTACCCATCAACGCTGCTGCTGCCGCGGCAACCAACGGCACCGTCCTCCTCCAGAGCCCCACCCCCACCCTAGTGCTGGTGTCATCCGCCTCGCCCTCCCTGACCTCCGTCACCCCCGGTTACCCCACTTTGGCTTGCATCTCCATCACGCCCCCCTCTTCGGGACCCCCCCTCACCAACCCAGCCAGCCCAGGGGAAGGGCGGGGTAGGACGGAGAGGACAGGCTCGTTTGGGGGGGAGGTTCAGCAGCCAGTGGCCTGTCACCCCTCTCCTACAGCCCTGCTGCCCCTCATACTGCCTGCAGAGAACCTGCACCCCACACCATGCAAAGACATCATCATGGGACGCCCCGGGACAGtCTGGACCAACGTGGAACCCCGGTCAGTTCCTGTGTTTCCCTGGCATTCATTGGTCCCTTTCCTGGCACCAACCCAGTCAGATGCCTCTACTCAGTCTGGTGAGGGCCAACAACCAATCAATCACCCCCAAGCTGCCAGTCTGAAAACAGAGTCTCACGGGTGTGCAGTGCTGCTACAGGAGACCAACGAGGACCACCCCTCCCTAGAGAGAGGACCCACAACACGGCTGACTCCCTCCACGGACGACCTGGCCCCGGAGAGGGAGGCCGAAAGAGAGAGGCCAGACAGTGAGACTGAGAGTGATGTGGATGAcccCTTCTTCCCCAGTGTTCTTCCTGAGCCCTTGTCTGTGACTCCTGTGAAGAGACGCACTCAGTCCCTCAGCGCCCTGCCTAAAGATGGGGACAAGAGCAGCCCTGGCAAGAGGGAGAAGGACCACATCAGGCGGCCAATGAACGCGTTCATGATCTTCAGTAAGCGTCATCGAGCGCTGGTGCACCAGAGACACCCCAACCAGGACAACCGCACGGTTAGCAAGATCCTGGGCGAGTGGTGGTATGCCCTGGGGCCCAAAGAGAAGCAGAAGTATCACGACCTCGCCTTCcaggtGAAGGAGGCCCACTTTAAAGCCCACCCAGACTGGAAGTGGTGCAACAAAGACAGGAAGAAGTCTAGTTCTGATGGCCGAGGGCTCCCGGGGCCGGGGGGCAAAGACATTAGAGAAAGGAGCATGTCTGAGACCACCGagccccATGGTGTGGAGCTGAAAGGGGTGGGGCCTGGCCTGCTGGGTGTGTCTGAGCGGAATCCAGGAGAGGGGCATGTAGGTCAGCTACCCCGCCCCCGAGCCTTCTCCCAGAGTGCCGTGCACAGCctggagaggagtgagaggggcAACACACAGGCCCTGGCCGAACTGTCACAGatGTGTGGGGATGGTGGTGGACAGTTTTCGGGGCGCGCCCAGACCCTGTCCCGGTCTCAGAGGGGGGTCAGTGAGGACATGACTAGTGATGAGGAACGCATGGTCATCTGTGAAGAGGAGGGAGACGACGATGTCATCGAGGACCCGTACCCTGCCAGCTCCATAGACCTGAAGTGTAAGGAGAGAGTGACGGACAGCGACAGTGACAACGCCTCTGGGAACGAGAGCGATCGCAAGcGTGTCTTTGCTCCAGTGATCTGCTCTTCCTCCTCGCAGCCCACCCCCCACGGacgctccgtctctctctcctcctaccctTCCAAACGCTacgatgaggagagaggaggggggctctCAGAccgcaggagaaagagaggaatagagggaggaggtggtgatggaggaggagtggcatccctctctctttccctgtcctcCTCAGGCCACTCTGTCATCTCCAGCCCCGGAGGCCCAGTTCCTTCTGCCCTTGCCCCCCTtggcctgtctcctctcctcggGTTGGGGGCTGTCAGAGTGGCCTCTACAGTGGTGACCAACGTGGTTCGTCCGGTCGTGAGCACGCCAGTCCCCATCGCTAGTAAACCCCGAGACGGAGCAGCTTCATCCATTCCTCACCCACCAGACAGGAGGTCCCTCCCATCGCAGCAAGCGCAGCTTCTGATTGGATCCGGAGTAGGAAGCGGAGGGCCTGGGTACTACTCCTCATCCTCACCCAATCCCATAGGTGCAGGGGCGGGTCCAGGGGGGCTGGTGACCAGCTTGGTGTTCCCGGGGCACAGCCAGTCCACCGTCCAGCTCATCAGTCCCTCCCCCCATCCGTCCTCCCACCACCAGCTGCCCCCCACCGCCCCCGTCTCTGcccccacacacaaccacaccaacggccccctgcccctctccctgctCCAGCCCCAGTTCCTCTCATCGTCATCTCTGGCATCCCCCGGGGGCAAAGCCATCACACAGGTCCAATACATCCTGCCCACCCTATCAGCCAGCTCCAATCCCAAGAGCCCCTCCCCTCAACTGCACAACCTGCCAAACAGTATCTTCAACCTGCCCACAGCTCCGTCCACCCACAAGTCCATAGCCAATGTGAAGCAGGTGGGGCCGGGCTCGCTGATGGGATACGCCTCCAGCCCAGCCGTCGGAGTGGTCAGCCCGGGAGCCAGAGTGCAATCCCAGTCCCCAGTCCTACAGGGCAAGATGCTGCTTCCCATGGCAACAGTGAGGACGGCACCCGCCCCTGCTCAGCAGTACCCCCTCGTGGCTCCACCTCTTCCTGTCCAGAATGGAGCTCAAGCAGGAAGCAAGATCTTCCAGATCGCTCCCATGCCTGTCGTCCAATCCCAGCTCCAGCAAGGCGGGGCAGGGCATCCTGGGAGCCCTTTTCCCGTTACCTTGGGAACGGCCACAGTGTTGCACCAAGGTTCTGCCCCATCTCAGACTGTGCTGCTGCCGCCCCCACCAACCAGgATCACCTATGTCCAGTCCACGCCAGGAgtcccctctcctctgcctctggtctccacaacaacaggctcctcctcctcccagcaggcccagccCACCCCTGGATCTGCATATGTTTCGTCACCCCTAGCAACGCTGGGCTTTACAGCCGTAGCTCCCCCTGGACAGAACCTAGTCCAACCCCTCATCACAGgtcagCCTCCCCTTCAGTCCCCAGTCCAGTCCCctacctgcccctccctcccctctggcCCAGCCTCTGCTTCAGTGGGACAGATAATCACCGCCATCTACCCTCCTACCAGCATCACCATGGCAACCGGGGTGGTCTCCATGTCAGCCGTGCCGCCCAACATGGTGTACACAGTCTCCAGCTCCTCCAGTCTGTCCACTCACATCCTTCCCAAACACACATTCGCCCCTGccacccccaccacacacagtcacatccagCTCCAGtcggacagacaaacagacaggcaaGCAGGGGAGAGACCCACGGACAGAATGTATCACTCTCAGTCAGAGAAAGCGGCAGACAGACAAGCGGAGGCGCAGCCTGAGCTACAGGCGtacggacagacggacaggccAACCCTCAcacaggcggacagacagacggcgAGGCAAGCCCAGACCTTCAATAAGAGCAGCAGCTTAGTGGCGCCCCCAAGTGGCTCCTCATTGTCACTGCGGCCCTGCAGCCCCCCCCTGCCCTCTCACACTTCCACAGGCAGTGCACCAGGCACCCCCAAACTCCCCCAGCTCCCGGTGAGAACCCCTCAGAAAATCAAAGCCACTGTTGCCAACATCCCGGTGGGCAGCTACGATGGAGGAGGccgaggaaaggaaagggagaagaaccgagagagggaaagcgagagcaCTGGAGCAAACAGTCGTTTTTCCTTTGAGCTGGAGCATCCTGGGAAGTCGGCGTccccctcccaacacacacacgctgctgaGGAGCCCCCCTCTGACAGACCCCCTGAGGGACACGGCCCTGGGGACAACACTGACACACGCAGCACAGAGGCCAGCAacgagTCAGGGTGGAAGGATTCTGTCCCCTCATCACCCCTGCCCCCTCCCTTGGGTACAGACCCTGCCCTGCCACCTCCCCAGAGCGACAAAGACGCCCTTCCTCCCAAGAAGGTGAAGGCCCGCCCCCCGCCACTCAAAAGGACCTTTGACTCTGTGGACAAgGTGTTGTCGGAGGTGTATTTTGAGGAGCGTTTTGCTCAGCTACCAGAGTTCAGGCCAGAGGAGGTGCTGCCCTCCCCCACCCTGCAGAGTCTGGCCACCTCCCCCCGCGCCATTCTGGGCAGCTACCGCCGCAAGAGGAAGAACTccacagACCTGGACTCGTCAACAGAGGACCCCGTGTCTCCTAAGAGGAAGAGTAGACGCCGCTCCAGCTGCAGCTCGGAGCCCAGCACACCCAAGAGCGCCGCCAAGTGTGAGGGAGACGTCTTCACCTTCGACCGACCAGcccCCCCGTCTGTGTGTCCCCCTCCAGGGTCCGGGACAGGGacaggagctgaaggagaggACATCCTGGGGGAGCTGGAGTTTGACAAGGTGCCCTACTCCTCTCTGAGACGCACCCTGGACCAGAGACGAGCCCTCGTCATGCAGCTCTTCCAGGAGCATGGCTTCTTCCCCTCAGCCCAGGCCACGGCAGCCTTCCAGGCACGCTACTCAGACATCTTCCCCACCAAGGTGTGTCTGCAGCTGAAGATCAGGGAGGTCCGACAGAAGATCATGCAGACTGCCGTCCCCTCTGAGACCAACGAGGCTTCCTCGCTCCCCGGACCGTCTGGCGCCCAATCAGGGGAAGGGACAGGAGGAGGGGCGGAGCCATTGGGAGAGGAGGCGGatcgagagagggagggtagtCCAGAGGAGCTGAGGGATTCGCAGGAGTCTTCTAGATGAAGGATGCTGACAGGTTGGATTGACCAATCAGCGATGGACCAGTTCCCCAAATCCCGCCTCTTCTTAATTTTGTTGAAGCTACACCCCTCTGTCTGTGTGCATATctggacctgtctctctctctttctccagagaGCCAGGTCAGAAAGAGCAAGtggagagacaaagaaagaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcaaaaTGTGTCAGAGAGGTGGAATTGTTTAAAACTTAAAAGGTTATTTTTTTAAGTGTAATTCACCCTCTccaaaaaaaattacatttcaaatgccacacacacagacagacaggcagacagacacacagctgatGAACCCAAACTCCAATACCCACACTTGAATTAGCACTTTGTTCGTAATATTAATATTATCCCTGTAAACTTCCATTGATGCCAGTGGACTATAGACTATACAATAACAACTCTCCAGCTGTTACCCATTGCCTTGGAGCAGGGCCCATCTTTCAGACTGAATAACATATCACGTAGTGGGACTGTTTGAAGGTCATTTATCTGACTCTAACCGGActcactttgttgtttttggtTGGTGAAGAGGGTCTGGCTCTTAATTCTCCCATTGACTCATTTGTTTCTGCTGGACATTAGGGGGCTGGGTCCCCACTGGCTTGAGATGATGCCATTGGATGGTGAGGGATCAGAAGGATCCTTGTTTTATTGTTAGATTTTTCTCTACTTTGAATCATAGAAGCATACCTTCAGGACAGGTCTGTGAGGGGGACTGGAGAGAGTTTAGGACCTCGCCCTCACTTCCCATGATTGGCTACAGAAGATGCCAGTAAAGATGCACCAAGCGTTCCTGCTAGTCTGATTCGCTCGCCATGAGGGAAGGAGGCGGGGAGAATGAGTCGATGGGCACATCATGGCTCTACATTTCTCACTCGGTCACTGCAACCATGTTTTATCTATTTGTGGACTTCAGTTGAGATCCCAGAGGAGTCAGGCTGACAGGCCTATTACTTCTAATGCCAAGCAGTTTTATTATCTAACTTTTTATTTTAAAGActacaaacatgtttttttttaatcaaacacATGTAACTTTGCAGTTCATTATGTTATTATTGTATTACTGTTACTTATATTACTCCTCTCATTGTTATAGTGGACCTGATCCCTGCTACGGGCTGGTATCAATGTCATTAGATTCTCTCTCAACCTGTTTTCTTATTTGAGGGGAAATGGGATGGGACCTGTGAGAGAGATGGTCCTCACCTgtgcctctttccctctctttgtctTCCCTTTCAACACCCCAGCAAGGACCTGGGGTGACAAATATTTTtattcatttcaatgagggataACAAAGAGAAGAGGGTTGACATTTGTATTCATTTAAGTGTAATAAGTATGTTTTTGGACAACCCTGTATaccgctctctctcactcccctgctAGTAAGTTTGATTCTATAGCCTCCTCCTTCCAGCTcttttccttcctttcttcctccctTACTGTTCTCTCCAGGCCTTTTTGGGGTGGGAGGAGATACGCCTGGAGGGGGCAGGGCAGTAAAAAGAGTGGTTGGGTATAATATTGGTTGTCTTTGTGCAagacttggttgtgttgtacaTATTATTTACTGTAGTCAGAAGACTCGCTATAATATTGATAAGGAACAATGTGTAACCCGACTTGTATTGACTTTTAAAAGATGCCATTACACAAGGTGAAACTCCAAAAATGTACAAATGAATAATAAATATGAATATTAACATTTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256598 lncRNA upstream 17788 12349603 ~ 12351053 (+) True G224426
TU256596 lncRNA upstream 19325 12348661 ~ 12349516 (+) False G224425
TU256597 lncRNA upstream 19325 12348661 ~ 12349516 (+) True G224425
TU256595 lncRNA upstream 19515 12348661 ~ 12349326 (+) False G224425
TU256577 lncRNA upstream 57517 12307188 ~ 12311324 (+) True G224409
TU256551 lncRNA downstream 66602 12497583 ~ 12521347 (+) False grik5
TU256561 lncRNA downstream 91005 12521986 ~ 12522519 (+) True G224395
TU256560 lncRNA downstream 112468 12543449 ~ 12546273 (+) True G224394
TU256556 lncRNA downstream 115540 12546521 ~ 12548469 (+) True G224390
TU256692 lncRNA downstream 162659 12593640 ~ 12594244 (+) True G224510
XM_036969317.1 mRNA upstream 11637 12259134 ~ 12357204 (+) False LOC110509826
XR_005040969.1 mRNA upstream 120928 12243040 ~ 12247913 (+) True LOC118945814
XM_036969215.1 mRNA upstream 127097 12154216 ~ 12241744 (+) False LOC110537505
XM_036969338.1 mRNA downstream 8965 12439946 ~ 12460864 (+) True LOC110509831
XM_036969377.1 mRNA downstream 32091 12463072 ~ 12488166 (+) False LOC110509786
XM_036969362.1 mRNA downstream 32308 12463289 ~ 12488166 (+) False LOC110509786
XM_036969370.1 mRNA downstream 32308 12463289 ~ 12488166 (+) False LOC110509786
XM_036969346.1 mRNA downstream 33315 12464296 ~ 12488166 (+) False LOC110509786
TU256553 other upstream 14522 12353826 ~ 12354319 (+) True LOC110509826
TU256552 other upstream 42766 12259321 ~ 12326075 (+) False LOC110509826
TU256429 other upstream 346397 12020965 ~ 12022444 (+) True G224297
TU256420 other upstream 354036 12014508 ~ 12014805 (+) True LOC110537447
TU256282 other upstream 578202 11788529 ~ 11790639 (+) True mrpl51
TU256720 other downstream 229639 12660620 ~ 12661167 (+) True grik5
TU257885 other downstream 535051 12966032 ~ 12966533 (+) True G225451
TU257850 other downstream 545192 12976173 ~ 12976779 (+) True LOC110509972
TU257841 other downstream 570590 13001571 ~ 13002216 (+) True LOC110509979
TU257853 other downstream 616519 13047500 ~ 13050953 (+) True LOC110510042

Expression Profile