RNA id: XM_021591002.2


Basic Information

Item Value
RNA id XM_021591002.2
length 2189
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110509848
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12691632 ~ 12700659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTCATGAATGACGATGTTAGGAAAAGGTGTGTGTTTATCTGCCATGCAGATCATTATCCAGTTTACCGAATTCCTGTCCTTCATGTACAATAAACCATAAATATCTGTATCACAATAACATTTACAGGGCCATTACCTAAACGGATACAAAGGTCACTGCAATGTGGCTTACAGTAAATGGGGAACTTCCTTGTCACCTGGCTGGCAGCTCTAAAAGATAGCACCTCAGCCTATTCTATAGCATCATACTGTGAGTGTACTAGAAGCACTTTCTAAATCTGGAACAGAACAAAGTATTCCAACAACAATGGAAACTGCAGTagccatctctctcactctgttcatACTCACAGGTCTCTGTGCTGGTCAGGGTCTGTTTCCACAAGGTTCTGTGAATGGAGCAGAAGGAGGGACAGCGATGTTCATCACAAATCTAATCCCACCAGCCCAGCCGTTCATAAAAATATCCTGGACTGTTGGTGGAGCCAACATTATAACCTCTCCTGGTGATGACTCTATAGGGCCTGGATACGGAGACAGGATCACTCTGAACAAAACTACTGGATCTCTGGAGCTCAGGAATCTGACCCTGGCTGACAGTGGAGAATACAGAGTGTCTATAACAACAGCTACAGCAGAAACAATCAATGGATCAACTGAACTGGTTGTGTATGAGAATATATCTGATGCCAACATCACAGGACCATCAAACAATCTGTTTGCAGATGTGAGCTCCGCCAACTTAACCTGTGAGGCTGCTGGTAACATCACTACTATACAATGGACGAAGGAAGGTCAGCCTCTGTCTGCTGGTGGCAATATATTATTCTCAGAGGAAAACAGGAAAGTATCCATCAGTCCTGTGAAGAGACACGACAACGGTGAATATGTGTGTAAACTCACCAACCCTGCCAGCTCTGCTACTGCCTCCTATAGAATGATAGTGAACTATGGACCAGAGTCCATGACCATCCTGGGCCAAAACGTTGCTGAGGTGGAGTTATTCACCCTTATTTACTGCTCTGTTCAGTCTGTACCGCCTGCTACGTTCACCTGGTTGTTCAATGGGCAGCAGACAGGTGTACATGAAGCTGGATACATCATAAGGAGCGTCAGCTACAACAACAGTGGGGACTACAGATGTGATGCTAGGAATGATCTCACCGGAAATGTTATCAGTGTGGACCATAGTCTGTCAGTGAAAGATAAAACCCCTCCACCCCTAAGCCCAGAGGGAGCAGCAGGTATAGCAGTcgctgtgatgttggtagtgGTTGCTGTAGCTCTTGGTCTCTATTTCGGCATAACTCATCAACGGAACAATTCCACAAATACTACTGAGACAGGAATCAGCCATGCACCTGACACCAGCCATGGACCAGGGACCAGCCTTGCACCTGACACCAGCCATGGACCAGGGACCAGCCTTGCACCTGACACCAGCCATGGACCAGGAACCAGTCTTGCACCTGACACCAGCCATGGACCAGGAACCAGTCTTGCACCTGACACCAGCCATGGACCAGGAGCAAAAGGTGGTGTGTATGAGAATGTAGGACCTCCATTACCACCTCCAAGAGGCTCCAACATATATAACAGAAGTATAAAGTGAGCAGCTGATTTCACCTCATCTTCCACAGTTGGCTATGGATTCACCCATCAGGTTTTACACCGTAATCAAATACATGCAGAGAGGACAAACATTCACTGGAGGACCAGCCAAGGAGACTAGAAACTAGACCCTACTGGACTCCACTACTGAGTAGACACTGGTCTTTGTACTGTACAGCTCAGCCATCCAGCTATGTATACTTGCTCAATGTAAATATGGACTAGGCAACTATAGAGGACAAATTATATCCCCTTAAATTGCACACACCAGTTGAAGTCTTACTAATTTGAATCTGCTTTCTCTGGTCAGTGTCATCCCTCAGACCACAACCTGTGCTACACTAAATGCCAATAGGGGCGTTTTCATAGAAACCTCCCCTACTGAACCACATTTTGCAACAGGTAACAGCAACTTTTTTTTCCACTGAAAGGAGGAAGATGAGAGGAAGTTTGAGTATACCTGTTATGCTTGCTGAATCCTCAAAAAACTAGTGAGGACTAGACTGCCTATGTGGCTCTGGCCAAAAGAAGTGCACCATATAGGATACCAAATATGAACTGAAATTCCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257643 lncRNA downstream 18042 12673056 ~ 12673590 (-) True G225292
TU257641 lncRNA downstream 22376 12669047 ~ 12669256 (-) True G225290
TU257638 lncRNA downstream 24062 12667362 ~ 12667570 (-) True G225287
TU257635 lncRNA downstream 25323 12666103 ~ 12666309 (-) True G225284
TU257617 lncRNA downstream 27053 12662483 ~ 12664579 (-) True G225266
TU257730 lncRNA upstream 79264 12779923 ~ 12781221 (-) False G225345
TU257731 lncRNA upstream 79264 12779923 ~ 12781221 (-) True G225345
TU257782 lncRNA upstream 113340 12813999 ~ 12817178 (-) False G225369
TU257767 lncRNA upstream 113764 12814423 ~ 12815904 (-) False G225368
TU257790 lncRNA upstream 114278 12814937 ~ 12818159 (-) False G225371
XM_021584076.2 mRNA downstream 758 12688479 ~ 12690874 (-) True LOC110505096
XM_021584068.2 mRNA downstream 759 12688479 ~ 12690873 (-) False LOC110505096
LOC110503604 mRNA downstream 17827 12670489 ~ 12673805 (-) True LOC110503604
XM_021590919.2 mRNA downstream 252850 12432169 ~ 12438782 (-) True LOC110509802
trnav-uac mRNA downstream 561386 12130171 ~ 12130246 (-) True trnav-uac
XM_021584088.2 mRNA upstream 26405 12727064 ~ 12732403 (-) True LOC110505108
XM_036963875.1 mRNA upstream 35094 12735753 ~ 12745687 (-) True LOC118944453
XR_005039829.1 mRNA upstream 52023 12752682 ~ 12753786 (-) True LOC118944488
XM_021591025.2 mRNA upstream 53139 12753798 ~ 12758180 (-) True LOC110509853
XR_002471505.2 mRNA upstream 60860 12761519 ~ 12763981 (-) True LOC110509869
TU257501 other downstream 218572 12472299 ~ 12473060 (-) True G225171
TU257449 other downstream 233841 12454388 ~ 12457791 (-) True G225127
TU257419 other downstream 350666 12336241 ~ 12340966 (-) True G225099
TU257266 other downstream 610399 12071287 ~ 12081233 (-) True G224988
TU257215 other downstream 675531 12014926 ~ 12016101 (-) True G224954
TU258665 other upstream 366214 13066873 ~ 13067357 (-) True G226124
TU258728 other upstream 476519 13177178 ~ 13180272 (-) True G226187
TU258769 other upstream 523225 13223884 ~ 13224515 (-) True G226224
TU258842 other upstream 643415 13344074 ~ 13344375 (-) True G226294
TU259125 other upstream 1226015 13926674 ~ 13927833 (-) True wu:fe05a04

Expression Profile