RNA id: XM_021584088.2


Basic Information

Item Value
RNA id XM_021584088.2
length 2237
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110505108
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12727064 ~ 12732403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTATTCTATAGCATCATACTGTGAGTGTACTAGAAGCACTTTCTAAATCTGGAACAGAACAAAGTATTCCAACAACAATGGAAACTGCAGTagccatctctctcactctgttcatACTCACAGGTCTCTGTGCTGGTCAGGGTCTGTTTCCACAAGGTTCTGTGAATGGAGCAGAAGGAGGGACAGCGATGTTCATCACAAATCTAATCCCACCAGCCCAGCCGTTCATAAAAATATCCTGGACTGTTGGTGGAGCCAACATTATAACCTCTCCTGGTGATGACTCTATAGGGCCTGGATACGGAGACAGGATCACTCTGAACAAAACTACTGGATCTCTGGAGCTCAGGAATCTGACCCTGGCTGACAGTGGAGAATACAGAGTGTCTATAACAACAGCTACAGCAGAAACAATCAATGGATCAACTGAACTGGTTGTGTATGAGAATATATCTGATGCCAACATCACAGGACCATCAAACAATCTGTTTGCAGATTGGAGCTCCGCCAACTTAACCTGTGAGGCTGCTGGTAACATCACTACTATACAATGGACGAAGGAAGGTCAGCCTCTGTCTGCTGGTGGCAATATATTATTCTCAGAGGAAAACAGGAAAGTATCCATCAGTCCTGTGAAGAGACACGACAACGGTGAATATGTGTGTAAACTCACCAACCCTGCCAGCTCTGCTACTGCCTCCTATAGAATGATAGTGAACTATGGACCAGAGTCCATGACCATCCTGGGCCGACATATCGCTGAGGTGGAGTCATTCACCCTTATTTACTGCTCTGTTCAGTCTGTACCGCCTGCTACGTTCACCTGGTTGTTCAATGGGCAGAAGACAGGTGTACATGAAGCTGGATACATCATAAGGAGCGTCAGCTACAACAACAGTGGGGACTACAGATGTGATGCTAGGAATGATCTCACTGAAAATGTTGTCTCTATGGGCCATAGTCTGTCAGTTAAAGATAAAACCCCTCCACCCCTAAGCCCAGAGGGAGCAGCAGGTATAGCAGTcgctgtgatgttggtagtgGTTGCTGTAGCTCTTGGTCTCTATTTCGGCATAACTCATCATCGGAACAAGAAAGGGAACAATGAAGAGAAAGATACAGACGCACTGAGCAGATCATCCCAGACAGAGGATATGTCCATGTCCAGCACTGACAAAGGACGTGAGGGGCACGAACTGACTACCCAAATCCAGGACAGAACCCATGATCGCAAGCAACCACAACCAGGCACCAGCCATACTATAGCCACCAGCCATTCACCAGGAACTAAAGCTTCTACAGGTGTACACGATTATGAGTGCATAGCAATTAAGAAAACTGGAGCTCCAACACCACCTTCAAGAGGAAAGCTTCCTGCCAGACAAACCAACACTGACACTGGCTCCACCATGTACTGTAAAAGTATAAATTGAGAGCAGCTGATCTCAACTACATATCTTCAGTTGGCTCTGGACTTCACCCATCAGGTTTTACACCTTAATCAAGTAAACATGGACACAACAAACGACTGGATGACCAGCCAAGAAGACTAGACACTACTGTACTCCACCTCTGATGAGACACTGGTCTTTGTCTAATTGCTCAATGTAATATAGACCAGGTAACAGTACACTGAGACACAAGGACAAATTGTATCCCCTTAAATTACACACACCAGTTGAAGTCCTACTCATTTGAATTGACTTTCCCTGGTCAAACTGCCATCCCTCAGACCATAATGACCTGTGTTACATTAAATGCCATCAGGGGAGTTTTCATAGAAACTTCCTACACTGAACCACATTACACATGTAACAGATGTAACATCGGGTTTTTTCCTCTGAAAGGAGGAAGTTTGAGTGCTCCTGCTATGCTtgctagtgcactatataggatgCAGAAGATTCACTGAAATTCcaataaaataatggaattaatgtTTTATTCGTCTCATGCACTGAACGATGCAACATGTATGGATTTTGTTAATGACTCTGGAATTGGGTGTAATACAAATAATCTTGACCCTCACACTTTATTTAGAATAATATTATACACCTATTATACACATCTCATGCATTGTGAGTGTTAAATGAGTAGAGTTGGAGTGGATGAAAATATCATAAACGAGTACATCAACAACTTTTTATTTATCATAGGTCTCTGATCACTATAGGGTCTTGTAAATATTTCTTATTTTGTCTCACAGGATTAACTGAATAATAAAGAAATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257643 lncRNA downstream 53474 12673056 ~ 12673590 (-) True G225292
TU257641 lncRNA downstream 57808 12669047 ~ 12669256 (-) True G225290
TU257638 lncRNA downstream 59494 12667362 ~ 12667570 (-) True G225287
TU257635 lncRNA downstream 60755 12666103 ~ 12666309 (-) True G225284
TU257617 lncRNA downstream 62485 12662483 ~ 12664579 (-) True G225266
TU257730 lncRNA upstream 47520 12779923 ~ 12781221 (-) False G225345
TU257731 lncRNA upstream 47520 12779923 ~ 12781221 (-) True G225345
TU257782 lncRNA upstream 81596 12813999 ~ 12817178 (-) False G225369
TU257767 lncRNA upstream 82020 12814423 ~ 12815904 (-) False G225368
TU257790 lncRNA upstream 82534 12814937 ~ 12818159 (-) False G225371
XM_021590992.2 mRNA downstream 26405 12691632 ~ 12700659 (-) False LOC110509848
XM_021591002.2 mRNA downstream 26405 12691632 ~ 12700659 (-) True LOC110509848
XM_021584076.2 mRNA downstream 36190 12688479 ~ 12690874 (-) True LOC110505096
XM_021584068.2 mRNA downstream 36191 12688479 ~ 12690873 (-) False LOC110505096
LOC110503604 mRNA downstream 53259 12670489 ~ 12673805 (-) True LOC110503604
XM_036963875.1 mRNA upstream 3350 12735753 ~ 12745687 (-) True LOC118944453
XR_005039829.1 mRNA upstream 20279 12752682 ~ 12753786 (-) True LOC118944488
XM_021591025.2 mRNA upstream 21395 12753798 ~ 12758180 (-) True LOC110509853
XR_002471505.2 mRNA upstream 29116 12761519 ~ 12763981 (-) True LOC110509869
XM_036969513.1 mRNA upstream 124291 12856694 ~ 12860099 (-) False LOC110509927
TU257501 other downstream 254004 12472299 ~ 12473060 (-) True G225171
TU257449 other downstream 269273 12454388 ~ 12457791 (-) True G225127
TU257419 other downstream 386098 12336241 ~ 12340966 (-) True G225099
TU257266 other downstream 645831 12071287 ~ 12081233 (-) True G224988
TU257215 other downstream 710963 12014926 ~ 12016101 (-) True G224954
TU258665 other upstream 334470 13066873 ~ 13067357 (-) True G226124
TU258728 other upstream 444775 13177178 ~ 13180272 (-) True G226187
TU258769 other upstream 491481 13223884 ~ 13224515 (-) True G226224
TU258842 other upstream 611671 13344074 ~ 13344375 (-) True G226294
TU259125 other upstream 1194271 13926674 ~ 13927833 (-) True wu:fe05a04

Expression Profile