RNA id: XM_021591262.2


Basic Information

Item Value
RNA id XM_021591262.2
length 3009
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110509994
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13032077 ~ 13041681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCAGTTGTCCCCGCTAAAGTAAATTGTTTTCTGGTTTTAATCTCGGCCAGTACGAAATCCATGCTGTTTTATCCGTGAAGATTAACGAGAAATAAAAACTGTTCCTGGTGAATTTGAATTCAAAGAAAGATGAATGTTAACCAGGCTGAGGTACTCAAATCAACTAGATGGATAACAAACCTGGAGAAAGTTAACATAACCAAGAGGACTAAACATTCCAAAACGAATGGGGTTACTTTGAACTCCATACAAGTAAAACAGGAACCAAGAAACTTTGAGCAGAAGGAAATTGGGGACGGTGACCGTTCCAAACTTTCCTTGCTGAAGAAGCATGTCAAGCAACAACAAACTACATCCAACCAACCGACCATTGGTAGTCAGATATCATTGAGTCCTCTAGTGCTGTTAACAAGATTGTCTAAGGTGGTGGTTAAGACTCTTCTGAGAGATACTAAAGTGTGTTTGGtgaaggaagagacagatgccAGGAGGAATGAAGACAACAAGGGAGTCTTGACTCCTCAGTTCTTTCCTTGTCCACACTGCACCATCTCctttactgactgttacttccTGGAGAACCACATCAAGAACAAACACCAGAAGCAGTACCTGGCCATGTTGAAAAGCCAAGTCTCAAAGAGTAAAAGAGTGTACGGCCCCACACACAGCTGTCTCCACTGTAGCTGCATGTTCCATACACCACGACAGCTAGACATTCATACCCGCCAGGCCCACCCCTCTGCCCGTCCCCAGAAACCTGCCCATCCCCGCAGGGTTCCGGGGAAACTCCACCCCTGCCCGCAGTGTGCCCGCAGATTCCCTTACCTGGGCACCCTGCTGAAGCACTGCAAGAATTTGCACAAAATGGCCGTTGTTCGCATCGATGGACACCTCAGTTGCGCggagtgtgggaagagctttgagAATTGTTGGGGACTGGGGCCTCACCGGTGTCACGAACCAGAGGGCACTAAACCTAAGGACACTAAGCCTGTGATATGTCTGGAAGTCGGCTTCCATTGCTCCGAGTGTGGCAAGATCCTCACTACTCCTACAAGCCTGAACACTCACATGCGCatccacactggagagaagccttatgaATGCAAGGAGTGCGGCAAAAGATTCTCGAATAGCAGCAGTTTAGGCAAACACCTGCTGATACACAAGGGGTTCAAAGAATTCAAATGCCAGGATTGTGGGAAGGCTTTCGCCCAGGCAAATCTTCTCAGGAATCACATGACTGTTCACTCTGGTGAGAGAAAGTTCTCCTGCTCCCATTGCGACAAGCGGTATGCATACAGGGGTAGTCTGGAGCTTCACCTGCGCACACACTCAGGGGAGAGACCTttcaaatgtactgtatgtggtaaAGACTTTGCTGACAAATGTTATCTGAAAACACACCTGAATATCCACAACAACCAGAAAAACTACCATTGTGGGGTTTGTGGGCGGAAGTTCATAAGGCTTGGGTTGTTGAAGTTACACATGCGCTCACACACCGGGGAGAGGCCCTACCACTGCACAGTGTGCGACAAGAAGTTTTTTAGACTCTCACACCTGAAGAACCATCATCTCACTCACACAGGTGAGAAACCATACACCTGTACAGAGTGCGGTAAAAGCTTCACTCAGTCTGGAGATCTGGCTAAACACAAGCGCCACCACACTGGGGAGAGGCCATTTGAATGTTCTGAATGCCACAGCCGTTTTATCTGTTCAGGTTCTCTGACCCTGCACATGAGGACCCACACTCACCGTGATGTAAAGCCATACTCCTGCCAagagtgtgggaagagcttttaTGAACAGAGTCATGTAAAAGTCCACATGAAAATCCACAATGGGAAACCGTATTCCTGCCCCCACTGCTTTTTCTGCTTTGCTCGCAAGAGCAACCTTTCCAAtcacctgtctagatgtcctcAACTTAAATGAGTTAAACctatggggggggggttgttcccTTCAGTGATCGATGCTGGACAACAGATGCAAACCGTACGGTATGGTAACTCCACAATGTCTTTAGCAATACTCCAATATGTTCATATACATTAGATTGTTAGTTACGTTTTTGTCTGTTTTTAacctgtattttatatttgaaaaaaTATGTACTGGAGGGACAGTGATGTACAGAAGATTGTTTGACTGATTGTCCTAGTGATTAGTAGGTGATGATGTTTCGAAAAGATGATGGGATGTTTATTTTCCTTTGTGTTTGTGGTGTATACCTTGATTTGGAAGAAGAGGAGCATTTATGTAAAGGTCACACCCCTAGTATTGTTATAAACATGACATTAGATtcatggggctcccgagtggcgcagcggtctacactgcatctcagtgctggaggcgtcactatagacacctggttcgaatccaggctgtatcacaaccggctgtgattgggagtcccatagggcggcgcacaattggcccagcgtcgtccgggataGGCCAGTGTAAATAAaaaacttgttcttaactgacttgcctaaaaatGAAAGGTAATTACATAAAGACCACTTGAACAGTTGGAACACATGATTTGTTTCAGTCCATAAGCCATCGTCCTAAACTTATGAAGCCATACTTCTGCCAAGAATGTGGGAAAAGCTTCTATGAACTGAAACACTTTAGATGAGGGGGAGAGATCATACCCCTTCCCCCTTGCTTCTCCAGCTTCACTCACAAACCAAATCTCTTGAAACACCTgcctaatgttgtaaatgatcaTGATTTGCCTTTTTTATAACACCATATATAATGAAACGCATTGTATTCCTCGGTATCACTTGGAGATGACTCTGCCACTGAAATTCTAACGTTATAATGGATCGTCATTAGGTTATAGTTACATTGTTTCATGAACGATGTTTTGTactttttctgtatttttttcttaatTTCTTCGCTTTTTAAATGATATACACGAGATTTGTATGCCGACTCCTGGTGATGACTGACAATAAAGATGCCATATTTCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257889 lncRNA upstream 60114 12971728 ~ 12971972 (+) True G225455
TU257887 lncRNA upstream 62255 12969555 ~ 12969831 (+) True G225453
TU257874 lncRNA upstream 87108 12944771 ~ 12944978 (+) True G225441
TU257873 lncRNA upstream 87866 12943962 ~ 12944220 (+) True G225440
TU257872 lncRNA upstream 88647 12942968 ~ 12943439 (+) True G225439
TU257907 lncRNA downstream 29755 13066473 ~ 13066920 (+) True G225473
TU257909 lncRNA downstream 31577 13068295 ~ 13068550 (+) True G225475
TU257979 lncRNA downstream 143718 13180436 ~ 13180641 (+) True G225541
TU257982 lncRNA downstream 151307 13188025 ~ 13188426 (+) True G225544
TU257983 lncRNA downstream 151973 13188691 ~ 13188901 (+) True G225545
XM_021582058.2 mRNA upstream 5452 13025325 ~ 13026634 (+) True LOC110503622
XM_021591237.2 mRNA upstream 10054 12985236 ~ 13022032 (+) False LOC110509979
XM_021591243.2 mRNA upstream 10054 12985236 ~ 13022032 (+) False LOC110509979
XM_036969694.1 mRNA upstream 54263 12972069 ~ 12977823 (+) False LOC110509972
LOC110509966 mRNA upstream 108038 12921414 ~ 12924048 (+) True LOC110509966
XM_021591290.2 mRNA downstream 882 13037600 ~ 13041681 (+) False LOC110509994
XM_021591281.2 mRNA downstream 939 13037657 ~ 13041681 (+) False LOC110509994
XM_021591299.2 mRNA downstream 1366 13038084 ~ 13041681 (+) True LOC110509994
XM_021591367.2 mRNA downstream 10722 13047440 ~ 13074579 (+) False LOC110510042
XM_021591377.2 mRNA downstream 10763 13047481 ~ 13051216 (+) False LOC110510042
TU257841 other upstream 29870 13001571 ~ 13002216 (+) True LOC110509979
TU257850 other upstream 55307 12976173 ~ 12976779 (+) True LOC110509972
TU257885 other upstream 65553 12966032 ~ 12966533 (+) True G225451
TU256720 other upstream 370919 12660620 ~ 12661167 (+) True grik5
TU256555 other upstream 650262 12368991 ~ 12381824 (+) True LOC110503596
TU257853 other downstream 10782 13047500 ~ 13050953 (+) True LOC110510042
TU258093 other downstream 454853 13491571 ~ 13491980 (+) True G225649
TU258095 other downstream 457167 13493885 ~ 13494435 (+) True G225651
TU258078 other downstream 480930 13517648 ~ 13520035 (+) True LOC110510206
TU258116 other downstream 509155 13545873 ~ 13546978 (+) True G225671

Expression Profile