RNA id: XM_021591299.2


Basic Information

Item Value
RNA id XM_021591299.2
length 2941
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110509994
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13032077 ~ 13041681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACTTATATCAGTATACTCGTAACAACCTAAGCATTACCGAACTTCTATTATATCAAATAAGCCACACGTATAAAAATATAATTTCCCCGAccccatacaaaaactcctcacATAAATAATGATCTGCTTAacgtggacagattttgggcagaGACACGctctcgctttgcctcttcctATCTGGTTGCACTTGCATTCAGTAGCATCTATGGATCACACGATTACATAGAATAGACGTAAACGGAAGAATCAAGGACAGGACGGTTCCAGGGGCTATTTATCACTCTGATGCTGTTGCAAAAGgaacgaaacggggagggacttatctgaatttgtccaatagaaactcgtgGTTGGACATGATTACACCCCTGATGTTCTGAGATTCTCTCTGGTGTTTACAAAACCACTTCTGTTGTGAGATTATTATATCATGAGGATGCTGCTAGATTCGCATATCAGGACCTGTTTAAAGGCGTTACGTGGTCAATCTGATGTTTGCTTTGGCCGTTCAGCATTTACGACGATaagcctctgcagaagtcagggcatgtATACTTATTGCGCTTTGTGGAGCAGCGCAGATCTGTTGTCAAGgaatgagtttgtgtttatacaggacctcccatCCCCACCTACCGTCACCCAACCATGTCAATGCGAATGAGCTATATGGAGCcctccacattgttacaacatttgggaGGCGCACGGCGGTGCTGTatggagctcaatttggcctctgcatgccaCCAGAGGCTCCGGGATTGCTTTACACCATCCATATAGAGTATCTgaccacattttcggatcaagcatTAATCGGCTTTTAGACAAACGCTATTTTTAACGGTAGCGCAAAGGATGGCTCTATATGGGAAATTAATTGCCGCAGTATTGCCGTTATAATGACTACATTATGCATGGAATGCCAAGGCATAATTGTATAAAAAATTCAAATGAAGAAGCACTCCAGCAAGATGAAGAGCAAACCTGGGTAAAAGCAACACAACAAAACTAAGATGTCTAAACACCATCAAGACCCCATCAAAACAGAGTGTGGAACACAGTCAGATGATGTTGACTGCAATAGAGAAGAACTAGACTTTAGCCAATCACCCTACATTACTAAAGGGGTATGTATCAGCTCCATCCAAATCAAAGAGGAACCAACAGACTTTGAGCAGCAGGGAATGGGAGAGGAACCAAACCGTTCAGTTCCTTCCTTCCAGAAGAAGCACATCAAACATCAAAATACATCCAATCCAATGACCGGGTGTAGCAAGATATCAAGGAGTCCTATGGTGATGCTAACAAGATTGTCTAATGTGGTGGTTAAGACTCTTCTGCGAGACACTAAAGTgtgtttggtgaaggaggaaaaCACAGACGAGACAGATGGAGtCTCTACTTCTCAGTTCTTTCCTTGTCCACACTGCACCATTTCCTTCACTGACTGTTACTTCCTGGAGAATCACATCAAGACCAAACACCCGAAGCAGTACCTGGCCATGCTGAAAAGCCACGTCTCAAAGAGTAAAACCGTGTATGCCCCCACACACAGCTGTCCCCACTGTATCTGCATGTTCCATACCCCACGACAGCTACACGTCCACACCCGTCAGGCCCACCCCTCTGCCCCGCTAAGGAAACTCCACCCCTGCCCTTATTGTGCCCGGAGCTTCCAGTACATAGCCAGACTGCATACTCACTGCAAGGTTTGGCACAAAATGGCTGTCGCTTTCATCGATGGATACCTCAGTTGCGCTGACTGTGGAAAAAGCTTCAAGAATTCCTGGGGACTGGGGCCTCACCAGTGTCACAAACCTGAGGACACTAAGCCCGAGGATGGCCCTGTCTATATGAACATTGGCATGCCATGCTCAGAGTGTGGCAAAAACTGCTCTAGTCCTCGGAATCTGCGcatacacatgcgcacacacaccggCGAGAAGCCTTATGTCTGCAAGGAGTGTGGCAAGAGCTTCTCAGAAGACAGCAGTTACCGCAAACACATGATGATACACTCGGGGGTCAAGCCATTCAAATGCCAGGATTGCGGAAAGGATTTTGCCCGGATGGGGCGACTCCGAGTTCACATGACTATTCACTCTGGCGAGAAGTCTTTCTCCTGCTCCAAATGTGACAAGCGGTTTGCATACAAGGACTGTCTGAATCTTCACCTGCGCACACACTCAGGGGAGAGACCTTTCAAATGTACTGTGTGTGGTAAAGACTTTGCTTACAGAAATTATCTGAAGTTGCATCTGAAGATCCACAACAATGAAAGGAACTACCATTGTGGGGTTTGTGGGCTGAAGTTCATAAACAGTGCTGCGTTGAAAACCCACCAGCGCACACACACTGGGGAGAGGCCTTTCCATTGCACAGTGTGTGACAAGACATTTTTTCGACATGAACACCTGAAGAACCACCAGCGCACTCACACAGGTGAGAAACCATACACCTGTACCGAGTGCGGTAAAAGCTTCACTCAGTCTGGAGATCTGGCTAAACACAAGCGCATCCACACTGGGGAGAGGCCATTTGAATGTTCTGAATGCCACAGACGGTTTATCTGTTCTGCTGATCTGACCAGACACATGAGGATCCACAATAACTCACGGCCATATCCCTGCCAAGAGTGTGACAAGAGATTCCGCTTGGCCAACCACCTTAAAATTCACATGAGGACCCACACTGGGGAGAGACCATACTCCTGCCCCCGCTGCCATCGCACCTTTTCTCGCACCCACCACCTCACCGGTCACCTGCCTAGATGTCGCTGAATGATGAAATTGGACTATATAAATCAACTTTTTTACTCTTATTGTAGTTATTTAATAAGGGAACAGTGGGGTACAGAAGATGATTTTGTGCCCGACTCTGACCTGGTAATGCTAATAAATGTTAATGACAATAAAGGCCCCTATATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257889 lncRNA upstream 66112 12971728 ~ 12971972 (+) True G225455
TU257887 lncRNA upstream 68253 12969555 ~ 12969831 (+) True G225453
TU257874 lncRNA upstream 93106 12944771 ~ 12944978 (+) True G225441
TU257873 lncRNA upstream 93864 12943962 ~ 12944220 (+) True G225440
TU257872 lncRNA upstream 94645 12942968 ~ 12943439 (+) True G225439
TU257907 lncRNA downstream 24792 13066473 ~ 13066920 (+) True G225473
TU257909 lncRNA downstream 26614 13068295 ~ 13068550 (+) True G225475
TU257979 lncRNA downstream 138755 13180436 ~ 13180641 (+) True G225541
TU257982 lncRNA downstream 146344 13188025 ~ 13188426 (+) True G225544
TU257983 lncRNA downstream 147010 13188691 ~ 13188901 (+) True G225545
XM_021591255.2 mRNA upstream 1366 13032077 ~ 13036718 (+) False LOC110509994
XM_021591262.2 mRNA upstream 1366 13032086 ~ 13036718 (+) False LOC110509994
XR_005041131.1 mRNA upstream 1366 13032086 ~ 13036718 (+) False LOC110509994
XM_021591269.2 mRNA upstream 1366 13032223 ~ 13036718 (+) False LOC110509994
XM_021582058.2 mRNA upstream 11450 13025325 ~ 13026634 (+) True LOC110503622
XM_021591367.2 mRNA downstream 5759 13047440 ~ 13074579 (+) False LOC110510042
XM_021591377.2 mRNA downstream 5800 13047481 ~ 13051216 (+) False LOC110510042
XM_021591393.2 mRNA downstream 5802 13047483 ~ 13051205 (+) False LOC110510042
XM_021591348.2 mRNA downstream 5803 13047484 ~ 13074579 (+) False LOC110510042
XM_021591357.2 mRNA downstream 6038 13047719 ~ 13074579 (+) False LOC110510042
TU257841 other upstream 35868 13001571 ~ 13002216 (+) True LOC110509979
TU257850 other upstream 61305 12976173 ~ 12976779 (+) True LOC110509972
TU257885 other upstream 71551 12966032 ~ 12966533 (+) True G225451
TU256720 other upstream 376917 12660620 ~ 12661167 (+) True grik5
TU256555 other upstream 656260 12368991 ~ 12381824 (+) True LOC110503596
TU257853 other downstream 5819 13047500 ~ 13050953 (+) True LOC110510042
TU258093 other downstream 449890 13491571 ~ 13491980 (+) True G225649
TU258095 other downstream 452204 13493885 ~ 13494435 (+) True G225651
TU258078 other downstream 475967 13517648 ~ 13520035 (+) True LOC110510206
TU258116 other downstream 504192 13545873 ~ 13546978 (+) True G225671

Expression Profile