RNA id: TCONS_00028729


Basic Information

Item Value
RNA id TCONS_00028729
length 536
RNA type mRNA
GC content 0.59
exon number 3
gene id XLOC_014518
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6960388 ~ 6988866 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaatagaaaaaaattgagggaaaaaaatcgGTGAATCCAAGGGGTTCGGGCGGATTTGGACGAAGTTTCCGAACTGTCCCGGCCCGGAGGAGCCCTGAGGGTTGAAAGGGAATCGCCAGCACCGATCGACAACGCCATGTTTCTGAGCAAGATGAAAGAGCAGCTCGGGCCGGACAAGGCTGGGTCCTTTCCACACTCGTCCGCCGCGCACTACCCTACAGCGGTGCTGACGGTGCCAGGCTCGGTCGCCATGGATACGGGAGCCGTCGGGAGGGTGCCAAAGCAGGAGAGTGGAGgtggtggtggaggaggagggGGCGGGTCAGCAGGGGCGCAGATGACTGGTGTAGGAGCGCACCTTCACCCACCTCACACATCCCAGAACATCACGGTGGTGCCCGTCCCGTCTACTGGCATCATGACTGCAGCAGGGTTAGTGATCACTCCTCAGGGCACGCTGGTCTCTCCTCCTGCCTCCTCTCAGTCTTTTGTTTCTGGACCGCCAACAACAACCATGATAGTGTCCGCTTTGCACC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145741

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030150 lncRNA downstream 64868 6900956 ~ 6915573 (-) True XLOC_014517
TCONS_00030149 lncRNA downstream 79105 6892715 ~ 6901336 (-) True XLOC_014516
TCONS_00029754 lncRNA downstream 150624 6801438 ~ 6829817 (-) True XLOC_014513
TCONS_00029753 lncRNA downstream 383824 6592036 ~ 6596617 (-) True XLOC_014511
TCONS_00029752 lncRNA downstream 997119 5968523 ~ 5983322 (-) True XLOC_014505
TCONS_00028747 lncRNA upstream 269502 7258339 ~ 7260919 (-) False XLOC_014525
TCONS_00028753 lncRNA upstream 287223 7276060 ~ 7283550 (-) False XLOC_014526
TCONS_00028754 lncRNA upstream 298693 7287530 ~ 7291703 (-) True XLOC_014526
TCONS_00028764 lncRNA upstream 512233 7501070 ~ 7501739 (-) True XLOC_014533
TCONS_00030151 lncRNA upstream 524281 7513118 ~ 7513678 (-) True XLOC_014534
TCONS_00028724 mRNA downstream 107334 6856589 ~ 6873107 (-) True XLOC_014515
TCONS_00028723 mRNA downstream 139935 6834380 ~ 6840506 (-) True XLOC_014514
TCONS_00028722 mRNA downstream 205570 6606207 ~ 6774871 (-) True XLOC_014512
TCONS_00028721 mRNA downstream 348541 6606197 ~ 6631900 (-) False XLOC_014512
TCONS_00028720 mRNA downstream 594847 6328234 ~ 6385594 (-) True XLOC_014510
TCONS_00028730 mRNA upstream 25618 7014455 ~ 7033636 (-) False XLOC_014519
TCONS_00028731 mRNA upstream 26052 7014889 ~ 7033636 (-) False XLOC_014519
TCONS_00028732 mRNA upstream 38208 7027045 ~ 7033670 (-) True XLOC_014519
TCONS_00028733 mRNA upstream 49857 7038694 ~ 7043355 (-) True XLOC_014520
TCONS_00028734 mRNA upstream 77151 7065988 ~ 7070691 (-) True XLOC_014521
TCONS_00028719 other downstream 741452 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 1137236 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028706 other downstream 1206406 5773921 ~ 5774035 (-) True XLOC_014501
TCONS_00028700 other downstream 1564526 5415799 ~ 5415915 (-) True XLOC_014495
TCONS_00028699 other downstream 1599734 5379593 ~ 5380707 (-) True XLOC_014494
TCONS_00028751 other upstream 287223 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028762 other upstream 479364 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028774 other upstream 836558 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028791 other upstream 1863703 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 3023661 10012498 ~ 10012614 (-) True XLOC_014580

Expression Profile

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