RNA id: XM_021591509.2


Basic Information

Item Value
RNA id XM_021591509.2
length 1099
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110510146
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13339193 ~ 13341845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCACACTGACTGCGATAACTGATGCACCGGCAATGTCAAAATTGTCAAACGAAATTTGTCACGTTATGCGACCTCGGGGATGTATTAATGAGCACATACACCTAATTTACACGAGAATAACGGAATATAATTTTCCTTAGAAACATCGTTTTGCATTTTTAAAGGCCGGTTTGATTCATTTTTTCTTTCTAGCCTCTTGTAGGTGTCTGAACTCGACAAGATGCGCCTCACCATTCAGATGTTGATATCCCATGGCCGGGTGGCCCGTAAAATGGGTCTCGGTCCAGAGTCCCGAATAAACATGCTTCGGAACATTCTTACCGGCCTCGTTCGACACGAGAGGATAGAGACCACCCGAGGTAGAGCAGACGAAGTTCGATTCTATGCTGAAAAGTTGATTGACTATGCCAAGAAGGGAGACACTGACGAGAAAGCGATGAAAATGGCAAACTTCTGGCTCACAGAAAAGGACCTGATCCCAAAGCTCTTCAAGGTCCTGGCTCCCAGGTTTGAGACCCAGCCCAAAGCCTACACCCGGATGGCCCGCATTCCCAACAGGGAGAACCTGGACAAGGCTGCTATGGCCGTGCTGGAGTATAAAGGCAACCCGTTCCCACCTCTCCAGACCGCCAAACGAGACAATGACCTCACGCTAATCAACCAGCTCCTCAAAGGCTACAGAGAACAGAGGGCACAGCAGGCAGCAGCCAAGGTTGAGGCATGATGCAACCAGCCACACATTGACATTACATGTGTTAGATCAGGGGTGTGTTCGATATGGTGAAACATTTAGAATGTCATGTCTGTTCTACAGTATATGAACATTCTGGAACGTTGCTCCCTCCTGAATAAGCCCCTGTATTTCCCAAGAAGGGGACCCACTGGTGGGTTGTACTCTAAACTTTTATAGTCCACAGATTCTGACTAGGTCCTGGTTTGGAAACATTGTGTTGCTTTGTGTGTAATAAGAAAAACACCCAAACACTTTTGGTGGATCACACTGTTTTAGATGACTGGCACAGTATTTGACTTTCTGTGGACCCCACTGAACATGAGAGGATGTTGTGTGTCAAAATAAATGTGACTGTTTGACAATG

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02879 RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258839 lncRNA downstream 5426 13333214 ~ 13334359 (-) True G226291
TU258787 lncRNA downstream 86572 13253005 ~ 13253213 (-) True G226242
TU258786 lncRNA downstream 86909 13252587 ~ 13252876 (-) True G226241
TU258785 lncRNA downstream 87680 13251870 ~ 13252105 (-) True G226240
TU258784 lncRNA downstream 88044 13251528 ~ 13251741 (-) True G226239
TU258751 lncRNA upstream 911 13342756 ~ 13343087 (-) True G226206
TU258863 lncRNA upstream 39261 13381106 ~ 13387143 (-) True G226314
TU258882 lncRNA upstream 72383 13414228 ~ 13414913 (-) False G226325
TU258877 lncRNA upstream 72457 13414302 ~ 13414913 (-) False G226325
TU258874 lncRNA upstream 72565 13414410 ~ 13415124 (-) False G226325
XM_021581457.2 mRNA downstream 410721 12925454 ~ 12929064 (-) False cxcr3.1
NM_001124423.1 mRNA downstream 410784 12925622 ~ 12929001 (-) True cxcr3.1
LOC110503616 mRNA downstream 456769 12880885 ~ 12883016 (-) True LOC110503616
XM_021591169.2 mRNA downstream 464097 12864942 ~ 12875688 (-) True tlr21
XM_021591157.2 mRNA downstream 479196 12856694 ~ 12860589 (-) True LOC110509927
XM_036969665.1 mRNA upstream 4264 13346109 ~ 13347872 (-) True LOC110510138
LOC110503661 mRNA upstream 18037 13359882 ~ 13360962 (-) True LOC110503661
XM_021591465.2 mRNA upstream 35010 13376855 ~ 13378759 (-) True LOC110510120
XM_021591447.2 mRNA upstream 46564 13388409 ~ 13410668 (-) False LOC110510106
XM_021591454.2 mRNA upstream 46564 13388409 ~ 13410670 (-) False LOC110510106
TU258769 other downstream 115270 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 159513 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 272428 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 866725 12472299 ~ 12473060 (-) True G225171
TU257449 other downstream 881994 12454388 ~ 12457791 (-) True G225127
TU258842 other upstream 2229 13344074 ~ 13344375 (-) True G226294
TU259125 other upstream 584829 13926674 ~ 13927833 (-) True wu:fe05a04
TU259117 other upstream 657891 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 1086948 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 1181335 14523180 ~ 14524854 (-) False psenen

Expression Profile