RNA id: XM_021591533.2


Basic Information

Item Value
RNA id XM_021591533.2
length 1696
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110510167
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13435596 ~ 13439420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTATGAGGTTATAGGGGACGGAGGGCGGGTCTAAACGTGCACCGGAAGGTTGTGGTTGAACTTTACCGGTGTGTAGCTAGAATTACCGCCGGACACGCACAAACAGTCAACCATGGGCAGTGTGTTGGCTGCCagctccccccctcccccaggcAGTGGCGTTGTCCAGGGGGCCCCTGGGTTGGTGTCAGTCCCCCCAGGGTTCTCCATGCCCCCCgtccctcccccctctgtcccggGACAGCCAGCGGTTGAGATAGGAAGCCCCCTCCCCAACCCTGGTACCTATGAGGAGTGTCATCGCAAGTGCAAAGAGGTGTTCCCCATCCAGATGGAAGGAGTGCGACTGGTGGTCAACAAGGGCCTGAGTAATCACTTCCAGGTCAGTCATACAGTCACTCTCAGCACCTTGGCTGAATCTGGCTACCGGTTTGGTGCCACCTACGTGGGCACTCAACAGACAGGACCTGCTGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACACCGGTAGTCTGAACGCCCAGGTTATCCACCAGCTCACCAGCGCCGTGCGCTCTAAAATAGCCATCCAGACTCAGCAGCACAAGTTTGTGAACTGGCAGTGTGACATGGAGTATCGTGGTGATGACTTCACCTCTGCTGTTACCCTGGGCAACCCAGACGTCCTCCTTGGCTCTGGTATTATCGTGGCTCACTACCTTCAGTCCATCAGTCCAGCCCTGGCGTTGGGAGGAGAGCTGGTCTACCACCGGAGGCCTGGGGAGGAGGGAGCAGTCACCTCCCTAATGGGCAGATACACAGGCAATAATTATGTTGCCACATTGACTCTAGGAGGTGCTGGTGCTCATGCAACATACTACCACAGAGCCAATGACCAGCTGCAGCTGGGGGTGGAGTTTGAGGGCAGCATGCGGACGCAGGAGACCGCAGTATCGTTTGGGTATCAGCTGGACCTCCCTAAAGCCAACCTGCTCTTTAAAGGTTCGGTAGACAGTAACTGGGTGGTGGGGGCGGTCCTGGAGAAGAAGCTGctgcccctgcctctctccttggCCCTGGGAGCCTTCCTTAACCAAAAGAAGAACAAGTTCCAGTGTGGCTTCAATGTCACCGTTGGCTAGACCTCCTCCAGCCGCCTCGACACACTGGGCCATGCTTGGACcagcacagaaacacacagtcctGGGCTTGTCATGTATCTACTGGATTCAGACTCTCCTATACTGTGAATTGTGGGGCAGAGTGAGCGAGGGGGTTACTCTATACCATGGAGCTAGGCCTACATATTGTAGCACAAGTCTATTTCCTTCTGGTATATATATAATGTGATACCCAACGAATAGAGAGCATCAGGTGATGCAGTCTAACATGTGATTAGACTAATATTGTCGCTGTCTGATAACTGCATCTACATTTTTGGCAATTTCCAAACAATACAGAAACTATAGGAAAGGAAAATAGGGCTATATTTTACTGTTAACGAATATACACTTCagtattttgaatacattttcttGGTCCTAGAGTCATGAAATGTTCAGAGTACACTTACAGCTTTCAATATGTAATAGAAATGGGCAGAAATGGAGTTGAAGTTCTCACCAGACCGTGACAATATAATGAAATTATTTAGAATCATAAACAACTTTTGTATCTTTGGTTTTTGATGTTAAAGACCATTAAggactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258900 lncRNA downstream 2492 13432325 ~ 13433104 (-) True G226335
TU258899 lncRNA downstream 5573 13429806 ~ 13430023 (-) True G226334
TU258885 lncRNA downstream 5843 13415229 ~ 13429753 (-) False G226326
TU258890 lncRNA downstream 16262 13415478 ~ 13419334 (-) True G226326
TU258874 lncRNA downstream 20472 13414410 ~ 13415124 (-) False G226325
TU258926 lncRNA upstream 22139 13461558 ~ 13461866 (-) True G226361
TU258934 lncRNA upstream 33504 13472923 ~ 13473144 (-) True LOC110505114
TU258936 lncRNA upstream 47587 13487006 ~ 13487717 (-) True G226371
TU258937 lncRNA upstream 48635 13488054 ~ 13488306 (-) True G226372
TU258939 lncRNA upstream 52732 13492151 ~ 13492412 (-) True G226374
XM_036969601.1 mRNA downstream 24925 13391043 ~ 13410671 (-) True LOC110510106
XM_021591454.2 mRNA downstream 24926 13388409 ~ 13410670 (-) False LOC110510106
XM_021591447.2 mRNA downstream 24928 13388409 ~ 13410668 (-) False LOC110510106
XM_036969595.1 mRNA downstream 24928 13391009 ~ 13410668 (-) False LOC110510106
XM_021591465.2 mRNA downstream 56837 13376855 ~ 13378759 (-) True LOC110510120
XM_021591547.2 mRNA upstream 1365 13440784 ~ 13458901 (-) False LOC110510175
XM_021591554.2 mRNA upstream 1365 13440784 ~ 13459048 (-) True LOC110510175
XR_005041143.1 mRNA upstream 24215 13463634 ~ 13473700 (-) False LOC110505114
XR_002470685.2 mRNA upstream 24215 13463634 ~ 13474497 (-) False LOC110505114
XM_021591565.2 mRNA upstream 40700 13480119 ~ 13481941 (-) True LOC110510190
TU258842 other downstream 91221 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 211081 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 255324 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 368239 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 962536 12472299 ~ 12473060 (-) True G225171
TU259125 other upstream 487255 13926674 ~ 13927833 (-) True wu:fe05a04
TU259117 other upstream 560317 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 989374 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 1083761 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 1083837 14523256 ~ 14524854 (-) True psenen

Expression Profile