RNA id: TCONS_00028733


Basic Information

Item Value
RNA id TCONS_00028733
length 1715
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_014520
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7038694 ~ 7043355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATGTTTTATAGACACGTTGTGAAAGTGAAACCGTTGTGAAAGCTCTACTGTTTTGGAAACCCCCAAACAGCGCAGTCACACATAGATATAAGTTTAACCTGCAGAGCAACGATGTCTGGATTTTCGACCATATACAAGATATCAATCATCGTATTTACATTGTGTTTTGGTGTTTGTGGTGCATGTCCGGTTCTGGAGTGCTGGTTTGTACAAGAGAAGCCTGGTCATGGAGGAGGTTTATCAACCCCAATGAGTCAAGAGAAATCTCTTATGTTCATCAGAACTGAAGCCTTCAGTGAAGAAATAAAGACTGAACTGCATCCTCCTGCAGACATCAGCTCATCCAGAGTCTACTATGTGACTGATCCAGCAGGCACATTCTGCAGTGCTGCTCTGAATCCTCCTAAAGGCTCAGTAAATAAACCCAAATGTGAGATTAACCCCTTCATGCCTCACGCCTCTATGGTCAGATGGGCTTCTGCTCTCACTGACTCCGCCCAGAGTCCAGTCTACCTGCAAGCTGATTGGTTTTCAGTGGCGGCACAAGGCCTTGATGAACAGCTGACACTGTCCAATATTATGAGAGCGCCTTTAGCTTCTAAAGACCCGAAAGTGATCCTCAGTGTGTCCAGCAAAACTCCAGTGGTTCGCTGTAGACTGGGAGAGCCGGTTCTGCTGGACTGTGGGTTCTGGGTTGATCCGTCTTCTCCTCTTCACGGCTCTGGATTCTCCATCGAGTGGCGTTATCAGTTCAGGGGTGAAGGACGGCTGGTGCTCGCTTACGACGGCAAGAATGATCGCTTTGCAGAGACGTCAGAGAGCGGAGCTGAAATGGACATCACAGGCCTCTATCAAACAGGCAACGTTTCTCTGATCCTGGAGGAATCTCAAGTCAGACACTCAGGAACTTACATCTGCACAGTTTACCTTCCTCATCTGCTGGCACAGGTGGCTGTGGACCTGGAGATCGTTGAGCCTCCATCTCTCTCCATCCTCCCCTCTCCTCTTCCTCTGCTGGTCCCGGGACAGGTGCTGTCGGTTCAGTGTGAGGCGTCTGGTTTTGCTCCTCACACTCTGGATCTGGGCTGGGAGTTTACCGGGGCTGATGGGAAGTCCCTCTCTCTGGGTCAGGGCAGTGTAACGGGTCACAGACGGGCGTCTGATGGCACCTTCAGTCAGAGCAGCCGTCTGGAGCTCGACTCCACTAAACTGAGACTCGCTCGGGGCGGAGAGATCAGCTGTGTGGCCAAACATGACGGAGGAACACGACGAGCCTCTGCTGCACTCAATGTCATCGGTGTCGCAGCTCCATCTATTGAGGACTCGATGGCGATGGTCGCTGTTGCTCTTCTTCTTTATGGCATGATCAAGTTTCTCTCCTGGACATTCAGCTCTTCTGACTCCGGTGACTCTGAATTAAATGATAAGAAGGAAAAATAAACCTGGATCTGGGATTTTTCATCTCGTCTCAAGCTCTCTGTGaagcagtttttattgtttttatttctgtttttattgttctcCTGAAAAGTCGTCTGaacaatttacagtaaaatgtttgtaaataatcAGATTGACATTAGGATTTTTAGACTGCTGTATCGGTGTTTGGGATGCTTTCTCTGTGTTGTAGTATTTTATATAGACTGATTTTAATGCTGGGTGTACAgatgctgaaaataaaaatattaaacatacatttatgattgttta

Function

GO:

id name namespace
GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I biological_process
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010110-2 Predicted to act upstream of or within antigen processing and presentation of endogenous peptide antigen via MHC class I. Predicted to be located in membrane. Is expressed in primordial germ cell. Human ortholog(s) of this gene implicated in MHC class I deficiency and severe combined immunodeficiency. Orthologous to human TAPBP (TAP binding protein).

Ensembl:

ensembl_id ENSDART00000104845

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030150 lncRNA downstream 123121 6900956 ~ 6915573 (-) True XLOC_014517
TCONS_00030149 lncRNA downstream 137358 6892715 ~ 6901336 (-) True XLOC_014516
TCONS_00029754 lncRNA downstream 208877 6801438 ~ 6829817 (-) True XLOC_014513
TCONS_00029753 lncRNA downstream 442077 6592036 ~ 6596617 (-) True XLOC_014511
TCONS_00029752 lncRNA downstream 1055372 5968523 ~ 5983322 (-) True XLOC_014505
TCONS_00028747 lncRNA upstream 214984 7258339 ~ 7260919 (-) False XLOC_014525
TCONS_00028753 lncRNA upstream 232705 7276060 ~ 7283550 (-) False XLOC_014526
TCONS_00028754 lncRNA upstream 244175 7287530 ~ 7291703 (-) True XLOC_014526
TCONS_00028764 lncRNA upstream 457715 7501070 ~ 7501739 (-) True XLOC_014533
TCONS_00030151 lncRNA upstream 469763 7513118 ~ 7513678 (-) True XLOC_014534
TCONS_00028732 mRNA downstream 5024 7027045 ~ 7033670 (-) True XLOC_014519
TCONS_00028730 mRNA downstream 5058 7014455 ~ 7033636 (-) False XLOC_014519
TCONS_00028731 mRNA downstream 5058 7014889 ~ 7033636 (-) False XLOC_014519
TCONS_00028725 mRNA downstream 49828 6960388 ~ 6988866 (-) False XLOC_014518
TCONS_00028729 mRNA downstream 49857 6980441 ~ 6988837 (-) True XLOC_014518
TCONS_00028734 mRNA upstream 22633 7065988 ~ 7070691 (-) True XLOC_014521
TCONS_00028735 mRNA upstream 62483 7105838 ~ 7110617 (-) False XLOC_014522
TCONS_00028736 mRNA upstream 66058 7109413 ~ 7144548 (-) False XLOC_014522
TCONS_00028737 mRNA upstream 68424 7111779 ~ 7115229 (-) False XLOC_014522
TCONS_00028738 mRNA upstream 70904 7114259 ~ 7144585 (-) True XLOC_014522
TCONS_00028719 other downstream 799705 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 1195489 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028706 other downstream 1264659 5773921 ~ 5774035 (-) True XLOC_014501
TCONS_00028700 other downstream 1622779 5415799 ~ 5415915 (-) True XLOC_014495
TCONS_00028699 other downstream 1657987 5379593 ~ 5380707 (-) True XLOC_014494
TCONS_00028751 other upstream 232705 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028762 other upstream 424846 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028774 other upstream 782040 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028791 other upstream 1809185 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 2969143 10012498 ~ 10012614 (-) True XLOC_014580

Expression Profile

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