RNA id: NM_001160511.2


Basic Information

Item Value
RNA id NM_001160511.2
length 550
RNA type mRNA
GC content 0.57
exon number 6
gene id rs19
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13718244 ~ 13723892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACGCGATCCGCCCGTTTAAACACGGGCTGGAAACCCCGTCTTACCCTCTTCCTCTCGCTGTCCACAAGCAAGATGCCTGGTGTCACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGTGCCCTGTCGGCTTTCCTGAAGAAGTCAGGAAAGCTGAAGGTCCCAGATTGGGTGGACATTGTCAAGCTGGCCAAACACAAGGAGCTGGCCCCCAGCGACGAGAACTGGTTCTACACCAGAGCTGCTTCCACAGTGCGCCACCTGTACCTGCGTGGGGGTGCCGGTGTGGGCTCCATGACCAAAATTTATGGTGGTCGCCAGAGGAACGGTGTGTGTCCCGCCCACTTCAGTGTTGGCTCCAAAAACGTGGCCCGCAAGGTGCTGCAGGCCCTCGAGCTTCTCAAGATGGTGGAGAAGAACCCCAACGGTGGTCGCAGACTAACCGCCCAGGGAACCAGAGATCTGGACAGGATTGCTGGCCAGGTTGCAGCTGCGAAGTTGCCCCCCAAGGCTGCCCCCACAGTTTAATAAATATTTTTTGGAGAAGG

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02966 RP-S19e, RPS19; small subunit ribosomal protein S19e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259016 lncRNA downstream 25076 13692956 ~ 13693168 (-) True G226447
TU259015 lncRNA downstream 26603 13691425 ~ 13691641 (-) True G226446
TU258997 lncRNA downstream 78470 13638805 ~ 13639774 (-) True G226429
TU258990 lncRNA downstream 94853 13620555 ~ 13623391 (-) True G226422
TU258905 lncRNA downstream 130966 13517724 ~ 13587278 (-) True G226340
TU259055 lncRNA upstream 24247 13748139 ~ 13811352 (-) True G226484
TU259067 lncRNA upstream 56939 13780831 ~ 13784759 (-) False G226492
TU259063 lncRNA upstream 57727 13781619 ~ 13784759 (-) False G226492
TU259064 lncRNA upstream 57727 13781619 ~ 13784759 (-) False G226492
TU259065 lncRNA upstream 57727 13781619 ~ 13784044 (-) False G226492
XM_036975402.1 mRNA downstream 39569 13558493 ~ 13678675 (-) True LOC110510231
XM_036975403.1 mRNA downstream 39570 13558493 ~ 13678674 (-) False LOC110510231
XM_021591565.2 mRNA downstream 236303 13480119 ~ 13481941 (-) True LOC110510190
XR_002470685.2 mRNA downstream 243747 13463634 ~ 13474497 (-) False LOC110505114
XR_005041143.1 mRNA downstream 244544 13463634 ~ 13473700 (-) False LOC110505114
XM_036975409.1 mRNA upstream 19641 13743533 ~ 13770898 (-) False LOC110510240
XM_036975407.1 mRNA upstream 19641 13743533 ~ 13775565 (-) False LOC110510240
XM_036975411.1 mRNA upstream 19641 13743533 ~ 13775565 (-) False LOC110510240
XM_036975408.1 mRNA upstream 19641 13743533 ~ 13883559 (-) False LOC110510240
XM_036975410.1 mRNA upstream 21321 13745213 ~ 13775565 (-) False LOC110510240
TU258842 other downstream 373869 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 493729 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 537972 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 650887 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 1245184 12472299 ~ 12473060 (-) True G225171
TU259125 other upstream 202782 13926674 ~ 13927833 (-) True wu:fe05a04
TU259117 other upstream 275844 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 704901 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 799288 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 799364 14523256 ~ 14524854 (-) True psenen

Expression Profile