RNA id: XM_021582128.2


Basic Information

Item Value
RNA id XM_021582128.2
length 4972
RNA type mRNA
GC content 0.51
exon number 4
gene id wu:fe05a04
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13909746 ~ 13927861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTCCCATTGTTGTTGTAGAAGACGGAAGCAAATCGGTCGGGGTTTGTAAGTGATTCAATTACAGCAAATTGTTTGTtacaaaataaattaaacatACGTTTTAACCCATATTTAGGCGAGATAGTAACCTTGTGCAACAAGCGTTATACAGTATCATAGATCAGTCACATAATATAGTTTCTGGATACTTTTCGGACAGTGAAGAGCGCATGCCTCCACCGCCACAAGGTGTTTCTGTCCAGGTGGAGCTTCTGAAAATTAGCCATCTTCACTGTTGCAATCAGAACTGAGGTGAGCTGCGGAAGTCCTTATGTCGTCATAATTTACCTGCTTATTCTGTCAATAGTTGTTGTAGGTACCATGTCAGACTTCACCATTGATATCCAGCTGACAGAACTAGGGTTCCCTGACATCTTGCAGCCCAGAGAAATTACCTGTGTGAAGGAAACACCGTCGCCTTCGGCCTCTAACAATATTTCCCCTGGATCCCTGGCCAACCTCCAAATCCCCAGTTCCTCGCCGCCTCCTCCTGCTGCGCTCACCCCCACAGCTGTGGACCCAGAACTGGTCGGTGTAGAACAGCTGGTTTCTGTAGACTCACAGACTGCTTCTACAGTACAGCAGGTTGCCTCACAGACGGGCCCTCACATTACAGTAACCCCAAGTCCCTCTGGGCCCCCTGAGACACTGACAATACTCTGCCCACCCCCTCCTTCTACACACAAACCGGTGGTAGTGGCACACACTTCACGGCCTGTTAGTCCCATATTTCTACCCAAGAGTTTAGTAAGTGGTCAAAGCGATAGCCTTCACCAAACCCCCAAAATAACTAAAACTGTCTTGATATCTGTGTCTCGTGTTGGAGCTGGTACTGTGTTGACTACTGTACCAGCTCCTTCCACTCCCCCTGTTGAACACTTAAGAACCATTAAGAATGATTCCAAGCTGCCACTGGCAGACCAGACTGCAATGTTTCAGACCACTCCAAAACCTGTAAACACAGGGAAGCCAGGAAGGGCGGTCACTGAGGAAGAAGAACCAGGAGAAAATATTGGAGAGGGAAtaggagggagaaatggagggaaagATGTTTTCGATGATGGGAAAGTGCAAGGACTGAAAGAAGCAGAAGTTGCAAAGAGTTTAGAGGAGGATTCTGAGGAAACAGATGACAGTGAGGTTTCTGagaatgaggatgatgatgaagaggaggaggaggaggacgaacTGGACCCAGAAGCAGAGCCTGGAGGTTCAGGTGAACACCGCTGTAGCGTCTGTGACCTCGTCCTTTCCTCCAGCTTCCAGCTCCAGGAGCACATGAACCTGCACACAGGGGCACGCCCCTACTGCTGTGCCGAGTGTGGTAAGCGCTTCTGTCAGCTGGCCAACTACCGCTCCCACCTGCGGACGCACGCCCAGCCCCAGACCTCAGTCCCACCCGTACAGCTCCGCTGCCGTGTTTGCCTGAAGGGCTTCGATTCTGAGCAGGGTTTGAAGGACCACCTAGCCAAGTCCCACTTTGAGAAGGAGTTCTATGAGTGTGACGCATGCAAGCGCATCTTCACCTGCCTGACCAAGTGTGAGGAGCACCTGGAGGAGCACAAGCGCGAGCTGGCGGACCACGTGTGTCTGCAGTGCTGCCGCCGCTTCCGCCTGCGCCGCTCTCTCCGCCGCCACAAGGAGCGGGGCTGTGTCCGCAGCTATCGCTGCACCGACTGCCCCATGAACTTCAGCCGCAAGAATGCCCTCCTCAAGCACAGCTTCTCCCACCTGGGCCTGCTGCCTTACACCTGCATCCAGTGCCGTGCACATTTCCGCCTGGCCAGGCTCTACCGTAAGCACGAGTGTGAGCCGGAGCGGCTCCACTGTGTGGCATGCCTGGGCGTCTTTCAGAGCCACAACGACTTCCAGAGGCACAAGAGGGAGACGGGCTGCTGGGGCCAGCAGGGGACCAAGGGGGATGAGATCCGCTGTATGGAGTGTGGCCAGGCCTTCTCCACGGCTGACGAGCTGAAGAATCACGCCGGGGCCCACCAGAGGGTGATGACCTGCTCCGAGTGCGGCAAGGGCTTCCGCTCGGCCTTGATGCTGATGTCACACATGGGGGGCCACGCAGGGTCGAGGCCCTGTCTGTGTAAGAACTGTGGCCTGGGCTTCCCTCACCAGCAGGGTTACGAGAGCCACCTCAAGGACTGTGGACGCAAACCCCCTCCTGTGATGGCTCCAAAGAAACCACGGAAGGACGCCCCTGCTGCTCCTTCCAAACCGCTAGCCCAGCTCGCTCCAAGTtatctccctgtctctgctcCTGTGAAGAAACCAGAGAGGCAAGCGTCAGCACCACTTTCTACCCCAGTGAGAATGCCAGGCTCTGCCCCTGCCAGAGTCGCTATGCGAGTCCCTGCTTCTACCCCAGTGAGAATGCCAGGCTCTGCCCCTGCCGGAGTCACAATGGGAATCCCTAACACCACTGCTGTCCGTGTGGGGAGCCCTGACCAACCCACCAAGGGGCTGTGGAAGCTCAGCCTGGACAAACAGCCGCCTCCTGGGGTGTCCTTGGTCATGTTTGTCCCTGCCAACACCCCTCTGGCCTCTGGACTCTCTGGTCCATCCTCCACCCCCCAGCTTCCAGCCCTCTCAGGCACACAGCCCCAGTGGAAGGTATTCAACCCAGCACCAAATCCAGGAGCCCCTCCTCCGATGCTGTGCCAGTCCAGCTTCACCTCTGAGCCGGGCCTGAGCCTCATAGCAGAGGCAAACCGGCGCTACTCCTCTGATGCCCCGCTGGATCTGGCCTTAAAGACAGCTTACTACGAACAGGAGCCTGCTAATTTACTACCTCTTGATCTGTCTAACAAGTCGACTTGCTCCACTCCTCCTGCTAACCTTGTAGTCAAGACTGAACCGAGAGACCCTGGGTTTGCAGAGGAGACTGAGGAAGAAGTATTCACAAGTTTAACAGGTGATAAAAAGGGGATAGTCTTTCAGAGTAAGAAGGAGCCAGGGGAGGATTCTAAAATGGAGGCTATGTCTCAGAAGGGGGGAAatagagaagggagaagagatgaagaCAGGCAAAATGACAGCAGAGATGATGGAACAGCTCAGTCTCAAATGAAGAAGTCACCAAAGCCGGGAGTCCCGTCAACACTGCGGCTCCTGACCGTCAAACAGACAGAACCTTTGAAGAACACTGCCAAAGTGGATCCAGTGAATCAGCTGAAAATCGAGTCAGTCAGCTCTTTGCACTCCAAAATGCTTCGGGGCTTAGTCCATATAAAGCAGGAACCACTGTCTCTAGAGCCTGACAGTGGAACACAGAGCACAGACTTCTGTTGGTCCAGCCCGCTGACAGCATTGAAGAGGAAGATGGAGCCAGACGTGGGGCTGGACTTGAGATGGGATGGGGGTACCCCAGGCTGTGTGCTCGACTTGAGGTTGAATGGAGGGAACCCAGCCAGTTGTGATGTGgcggagaaagcagaggagaggaacatGGAAGGAGACCGTGTAGAGGAGGAGCTTGATGGTGGCGAGAAGGATGGcgcaacagaggagaggaacatgGAAGGAGACCGTGTAGAGGAGGAGCTTGAGGGTGGTGAGAAGGATGGagcaacagaggagaggaaagcagaTAAGGATGGATCGGAGGAGAGGAAAGCGGATAAGGATGGATCGAAGGAGAAGGATGGAACCGAGGAGAGGAAAGCAGATAAGGATGGAtcggaggagaggaaagagcagAAGGATGGATCGGAGCAGAGGAAAGTGGATAAGGCTGGATCGGAGGAGAGGAAAGCGGATAAGGATGGATCGAAGGAGAGGAAAGCGGATAAGGATGGATCGAAGGAGAAGGATGGAAccgaggagaggaaaggggaggaggatgGAACGGAGAAGACTGATGCCCCTGTTGATGAACCCACAGCCCATAACCCAGAGGCACAGctccccccctctcccatcccctctcctccctcctcaccaccatgTAAAAGACGAAGGTCACTAAGGACAAGGGAAAAGCCTAGAGCCCTACGTGACTGTTTATTATAAGGGCAGTACTTTAGACAGAGTGAAAAATGGGATTGCTGACAACAATGTTAATTAGGCTGCCTTTTAATGGCCTGAGGAACAGAGGACAACAACCAAGCCTAATGTAAAACAATTCATACTAGGCTTGTTATTAAATTATAATAGCAACACATTTTGTGGATTAGTGGTGATTTTGATAAACCATGCCTCTACATGAATTTGCCCTCTGGATTTGGTTGCTTTCCTGTATTCCAATCATTTTTTCTTAGCTATTGAAGACTTACTATGTCTATGTTTAATGTACCTGCTAGTGTTTAGTGAGCTAGCTAACAATCCTTGTTGTTAGCTGCTTACTGTGTGGCAAGAGAGTGAGATTAGGGTAAATAGTGGCTATTGTTTTCGATGTTACAGTAGTTGCGTATGTTGGCAATAGGATCATGCTCTTCTTCCAGTGTTACCGCACACATTTCCAAACACTCCATATCTATTTGACTATACCAATATAACTTATTTGGGTTTTTTGTTATAGGTTGTCTAGTTAGTCTTCACTTGAATGTCATTGTAATTTTTGTCGTTTCTATTCTATATAAGCTGCTGTATGGGACTTCAGTCGCCAAGGTTTCTTATTCAGGTATTGATGGGGAGTGTTTGGGAGCCAGGATTTAATGTACTGTCAACTTTCTGAGAAATGTTTCTCAACAGCTCGGTTTTTGTTTGATTTGAGTTCCATGATGGGTAAAATATGCAAGAAAATGTATGTGCTGTCCAATTATAATGTTAAATTGACATGTATATCTTTTTCTATCACGTTGAATGTCTTACCCCAAATTCAACTGAATGGTTGCAGTGTTTTGTAGAGTTTAAAATATTCTGTTCTGAAATTGGGATCTTAAAGGATACAAATAAAGATCAACATATTGGAATGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259080 lncRNA downstream 4903 13828830 ~ 13904843 (-) True G226504
TU259168 lncRNA downstream 9003 13900363 ~ 13900743 (-) True G226571
TU259100 lncRNA downstream 50907 13847444 ~ 13858839 (-) True G226524
TU259063 lncRNA downstream 124987 13781619 ~ 13784759 (-) False G226492
TU259190 lncRNA upstream 53483 13981337 ~ 13981641 (-) True G226593
TU259191 lncRNA upstream 54036 13981890 ~ 13982242 (-) True G226594
TU259193 lncRNA upstream 55632 13983486 ~ 13983797 (-) True G226596
TU259194 lncRNA upstream 56023 13983877 ~ 13984102 (-) True G226597
TU259202 lncRNA upstream 105767 14033621 ~ 14033969 (-) True G226605
XM_021591709.2 mRNA downstream 372 13906345 ~ 13909374 (-) True LOC110510306
XM_021591720.2 mRNA downstream 7235 13886548 ~ 13902511 (-) True LOC110510354
XM_036975408.1 mRNA downstream 26187 13743533 ~ 13883559 (-) False LOC110510240
XM_036975411.1 mRNA downstream 134181 13743533 ~ 13775565 (-) False LOC110510240
XM_021591719.2 mRNA upstream 3993 13931847 ~ 13940405 (-) False LOC110510327
XM_021591718.2 mRNA upstream 3993 13931847 ~ 13940558 (-) True LOC110510327
XM_021591662.2 mRNA upstream 12850 13940704 ~ 13950230 (-) False LOC110510265
XM_021591656.2 mRNA upstream 12850 13940704 ~ 13950382 (-) False LOC110510265
XM_021591671.2 mRNA upstream 12850 13940704 ~ 13950382 (-) True LOC110510265
TU258842 other downstream 565371 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 685231 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 729474 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 842389 13066873 ~ 13067357 (-) True G226124
TU257501 other downstream 1436686 12472299 ~ 12473060 (-) True G225171
TU259117 other upstream 71882 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 500939 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 595326 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 595402 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 670935 14598789 ~ 14636710 (-) False LOC110503689

Expression Profile