RNA id: XM_021591662.2


Basic Information

Item Value
RNA id XM_021591662.2
length 7757
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110510265
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13940704 ~ 13950382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCCCATTCTGCAACCTGGATGGTGTATGACGCCATGATATCTGCAGCTCGTTTGTGTTGGCTTTTTGCGAAGCGAGAAACGACGCGGAGATGTCTGGGCTAAAGAAACCAACATAGGGAATTCGTTTTACAAACATGGTTGAACCTCCAGTCGTGGCAGGAACCAAGTTGGTCATGGAGCGCTTGACACTgccagttgagacagttgaacaAACAGTAGAAGTTGAGGAACAACCAATACTTACAGGTGAACAATACATGGAAACGGATGAACAATACATGGAAACTTATGAACAACCAATGGAGACAGGGTTACAACCAGTGGCAACTGAAGAACAACCAATGAGTGAACTGCTACTTGTCACAGAAGAGGCTTCTGAGTGTGTCTCAGACCCCACAGCTTCTACGGAGATAATTCTTGAACTATCCGCTGTTCCTCTAGAGTCTGCTGCTCCTGAAGAGTGGGAACTGGGCCAACCTGAGGATGCACAGAAGGAGACCCATGTGGATGACGTGGCCGCTAGTGACAGAAAAAATATTCCCCCCAAGAAGAACAGAATGGAGCCACTCAAGATGGACATGTCCAGGCCACCAAAAATGGTGACGCCGCTCACATCTTCCCAGATCTCTCTGCAGTGCCTGGAGTGTCACATCATCTTCAGCGACCACAAGAGCAAAGAGCGCCACCTCAAGCAGAGTCACCCGGCAGAATATGAGCAATGCATGCTGGGGGATGCCCTGTTTGCCTGCTACGTCTGTGACCGCCAATTCACTAACTCCAGTGACCTCATGCTTCATCAGCGTGCACACACGGAAAAGACACCCTTCAAGTGCCCCATCTGTGGTGAGGCCTTCAGCCGTTCCTCTGAGCTCACCCTCCATAAGAAGCTTCACTTCGGCCTGTACGGATACACCTGCGCAGACTGTGGGAAACCCTGCAAGACACTCACCTTACTGAAGTATCACCGccgcacacacacaggggagaggcCCTATGCGTGTAAGGAGTGTGGCAAGAGGTTTAGCATGTCCAAGGCCCTCCAGAAACACGCACTAGCGCATTCGCTGGAAGGAATGAAAGAAGTTGGAGGGATCACACCACCAATGAAGGCACAGCTAAAGAATAATAGTGGCACTGCAGTGGTAAAATTTTCCTGCTCCGTGTGCAAGGCAACCTTCAAGACTGCCAAGACACGGCTGCATCACATGAAACACAAGCACAACCTGTGTGTTACAGCATCCAGCAGCACCACACTAGCTGGCCAACAGGTGAAGCTAGGTCAGCCCATCATAACCCAGGTTCCTATGGGCCAGCCAACCTTTCTCCACATGGAACCCCTTGGGCCCTTCCAGCAGGTGGAAAACATAGACACTGAACAAATCCGGAAACTAATAGAGTCTTTGGGGAACGTGCGCAAAGTGAACCAGGTGGTGATACTGGGACAGGTGCCGCCACACGGTCAATCATTGGATCTACAGCGgctacagggaaagagagagcattTGCAACTCCGTTTTACTCAACCACAGTTTATAGAGCTGAAAAAGATTGGGGGTGGAGAGACTAAGTTGATGGGATTGGAACAGGCAAAGCCACAATGTGAATCGCTGGAACCAATTATTACATTGGAACCTGTAATATCAGATGGACAAATGGAGACCCCATTACtttcacacacacaggaagttgcATACGCTGTGCCAGCTGAGCATGCTGGATTAACACAAACACACGAAGGAGAGATGATTCCTCAGCAGTTACTTGGACAGACTGGTCAGACCGTTGAAGAAGAGAACACTATGATTCAGACTGTATCAGTGGAACAGGTGTTCTGTCACAGTGAAACAGTTGAGCTCAGGGAAATGGCTGAACAAAGTCAAACTGTTGTGTTGGAAGTCACTCCTTCACTGTTACCAACTCTGGAATTGGAACAGACTCAAACTGATCAACAAGGACTTATGTCTGCTTCCTCACTACCAACATTTCTACTTGAACAGACTTCTGGACAGAATCGAAGGGTTCAGGAGGGTATGAGTGACGGGACAAACATATTTCCAACAGTGGAGTTAAAGCTGACGCCATTAAAAACTGACCCGCAGGAAGAACTCTCCAATTCCTCATTGGTACCAACAGTTAAGTTTGCACAAACTCCTCCTGGACAAACAAGCCAGGTAGGAGAGACAGCCACACAGATGGAGACATTACAGTTAGAGCAGATATATTCCAGTATTGGACAGACACAACAGACGGGAATAGGACAGCGAAGATCAGTTGAGAAACCTCTTCTAGAAAACACAGAGAATGACCAGCAGCACATTTTGGAAAAGCCTTATGAAGGAAAGAAACAGACGGCACAAGAGCAGTTGCAGACACTGATAGATAAGTCTGTTTCTAACAACGCACTGAACAGCAGAGAGATGCCTCGCACGCAGACGTCAGAAATATTCCCTCCGCCGTCCGAGACAAAGGCACCACAGAGTTCACAACTGCCTGTGCATTTGATGTCAGTACAAGAATTTGTAAAAGTGAGGAAGAGAAAGCAGCCGAAGAACTCTATAGTGCAAGGAAATATGCAACAGCAGACAGTTGAGTTGAAAGAGAAGCCTGCCAAACGACCAAGAGCAAAGAAAGCTCATCTGGTTGTGAAGTTTGGTCCTAAAGAAAAGCCTAAAAACCAGAAGAAGCTTCCACAACCATCTAAGCTGCTTCAGAAAGGAGACCAGATTCAGGATATGAACCAAATGTCTCTCACAACTCTACCTGAAAAGAAATTGTCCTTAAAGGTTGGTAAAGAAAAAAAGGTCAAGAAGAAAAATGATATTTCCAAGTCAAAAATCAAATCCCCATCCATATTGTGTGAACCACATGTGCAGCAAGTCTTGCAGGTAGATGAGCAGGTGCATCAAGTGAAGCCGAGGAAGAAGAAAGTAAAAAAGCAACAATATGTAATTAGTGAGACTTTTGAGCAGATTAGCGCTGAGCCGATTAGCGAGCAAGAGGTGATCGCTCCACCCAAGCCAAAAAAGAAAAAGCAGCAGACGATGGCGCAGGAGGACCAGCCTAAGAAAACAAAGGGGCAAAAGCTGTCAAAAACggggagaaagaaaaagaaaccGAATGTGGAAGCAAGCCCAATATCAGAAGGTATGCCCGACCCTAAAATAAAGCAACAGTCCCTACTCCTACTGAAGGGTCACAAACAGCCCCAATTGAAAGTTTACAAATTAGATGCCTCAAAAGCCCCCCAAGGTCAAACAGATCTCCACCAAGACACCCATCCCATCCATAAGAAGAAAGGGCCAAAAAGCAAACAACTAAAAATGCTAGCTGCTGGAGGGAAAAGAAAAGTAGGGAGACCCAAAAAGAACCACACAGCACTCTCTGTGTTGGCTCCTTTAAAGACTACGTCTCATTCTTCTGACACATCTCTGACCAAGCCAAAGACCAGCAGGAAACGTACAGCCCAAAAAGTGGAGACCGAGGGGATCATCAGTGGCTCTCATTCCCGGCGAGCCCTTGAATGTAAGGACTGTGGTGAGAGGTTTTCTGACGTCTCGTCCCTCCAGGAGCACAAGGCAGCCCTGCATGCAGTGGAGAGCCCTGGTCTCACCTACACTAACGGCAACATCTTTGAGGGCGTTTCTAGGTCAGATCTAGGCCAGTCTCCACTAAAAGTGACAGAAGAGGTCATTGAAAATTCATTGAGTCAAAACACATTTGGAATGCAGGTAGCATCTGACTGGGATATGGAGGTGGAGATGAGAGAGGTAGGgttgggagaaagaggggagcgaGTCTCTTTCCCAACCCAAAAcccttccccctctctgcctctggCTGCTGCGCTTGTTGAAGGTGGAcagaagggaagggagaagaaCATGGAAAAAATTGCAGAGGGGATGGAATCATTTTCTCATATGGTCCCAAATTCAAATCAATCTTGCACCCCTCCACAAGTTCAATTCCCTTATCTGGCCAAATCTGACAAGGTCCAACCCCTTCTATTCGAGAGTCTTTCGCCTCCTCACCTCACACCCATAGCCCCCCTCCACAGCTGTCACCAAACGGAGGACACTAAGTCAGAGAGTCAGGGCAATATGAATGACACTGCTGATGCTCTCATACCTACCGTTTCTGGATTTGAGAACCTAGGGCCTATTGAGGATGAAATTAAAAAGGAGTTACTACTTGAGGTGGATTTGGTAACTGTTGGGGATGGGGACCAAAATGAGGGGGAACACCAGAGCTCACCTCATGAAGACAGTTCACCAAATGAGGGATCCAGCCTTCATGAAAACAACCGCACTCATGCACTACCTGCAAAAGCTCAGATTGGAAATGTGAATAGGACTGTAACAACACAAAATGTACAGACTGAATCCTGcccctctgacccactggagatCAAGCAAGAAGAGGAGGAGATTATGGTGCAGAGGAGAGAAGTGGAAAAGAGGGGAGTGGGAAGAAAGAATTACACCAGGGGCAGGAAAAGAGGAGTTGGACGTGGGAGGAGAGGTTCAGCCACAAGGAAGGGTCTAGGAGGAGAGGGCATGAGAGAAATGGAACCAGAGAAAGAAACGGATGAATGTCAGGTAGTCTACCAGCTGTATTCACTCAATAATGATACTGAAATCAAGGATGAAGCAGACGTCACTACTCTCCATCCTGGTCAGTCATCTCCCATCAGTTTACAGACCGAGATCAGATCTATCTCTGAGCAAAACATGCTAACAGCTCCATGTCCATCTGGATCCTGCATCTCACCGCTTGAGGAGGACCCTGAGGACCAGGTAGTGTTTGAGCTAGAGTCAGTCACCACcagtgtagtggaggtgttgAAGACCGAAGATGGGATGGTGATGAAGGAAGTAGCAGGGGACCAGGACGACAGGGACACTGGCCAATCCCCAGGCATCATACTGGAGAGGTTCCTCACCTCAAGGCAGAGCGAGGCAGCAGTGGGGGAGAATGGAGTGGTGCTCATGGCAGACTTGAGAGGTCAGGAGGTCAAGGTGGAGGAGAACACCTCCGATTTGGTTCCCTTGCCACACACCTCTCGTGCCAGACACACAGTGGAGCAGAGGGGGGTCAGGATGTATCTCGTGAAGCAGGAAAACAACCTGGTTTTGAATGATCcccaggttagtcaaggtcaatCCCAATTGAATGTGGAGCAGAGCAGTACCAGGCAGTGCATATTCTACCCAGTGAAGGAGGAGCGGGAGCTTCTGGAGGAACCATCTCAAAGTGAGCAGGGGGTACCAGCCCTGGTGGAGCCTGGAGAGGCCAGACTCGACCATCCAGTGGAGACTCTATCCACTACCAACCCTGCAGTAGAGGAGTATGAGGTGAACAGGAGCACAGCAAAGTTTGGATCTGAGATGAATGAGTATGGAGAAGATGAGCTGGACTTTGAGCAGCAAGAAACAGAGGATCTTGTTGATTTCCTACTTCAGAATTCTGACGAAGTGGAGTCCGAGGTTGTTGAATGTTCTGACCCGCAGCCTGACCCTGAGGCTGTAGTTATGGCCTGTTACCATGACAGCCAAAGCCATGCCTCACTGCATTCAAATGATATACCATACAACTTGCCAACCACAGAAAGCCAGGCTCATTTAGGATCTATGGGAGGGTCCCAGACAGGGACTGGCTACAGGAAACCAATTGATTACTTCTCCAAGTATTTTGGTTGGGATGCTTGGTCTGAGATTGCCCGGTGCACAAATAAAGTGTCCCATCTATCGAACCCAGTGACAGCAAAAGAGGTAGCCCAGTTTGTCGGAATCCACATTGCCATGGGAACATTGAAGTTCCCCAGTCTCAAGCTGTACTGGCAGGACTTCACCAGGGTGCCTCTGGTTGCTGACACCATGTCTGCCTCCcgcttctcccaactctcctgcAAACTGCAACTGGCATCTCCAGCGCCAGCAGGGGATCCCATGGACACGCAGGAAGCTGGACCCAGTGGTAATCTAGACAGGCCTAAGGAGGGAGACACCACACGCAACCCACTCCGAGCTTTACACACCCCAGCTAATCCTACAGTTGGCACAACTAGAGGTGAACTGGATGGCAGCGGCCACACACTTAAACGCGGTCACAGTCAAATACAAGCTCTTAGCTCCAAGTCTGTGTCTGCAAAATCCACAACACAGACATCCACAATCCCTCACAGCATTTGGCAGAGGTGTGGGGACGTACCATCCAGCCAGGACTGTTTTAGTTTTAAAACTGACCCCCTTTGGCGGGTTAGACCGTTAATGGACCACGTTCGGGCCAGATACCTGATGCTGAGAAGAGAGGGTGACCATGGAGTCGATCAATACCCTCTCCCTTTGACGTGTAGAGCGGTCAACAACAAGCGGCCCTCCTTGCACAGCACTGTCTTAGTTAGATCTGACGGTCTGATCCTAGATTTCAACCTTAGTCTGGATCTCTCCAACAAAGAGACCACAGTTGAGAAAATGGTGCCCagagatgggatggtgtatctctGCAAGCAGGAGCTCTCTACCCCTGCCATGTTGGAGCACCTCCTTGGGTCTGGGGTGCATGGTGCGGGCAAGGTGGGAGGGGCCAAAGGACAGATGGGTGATGAGTTTGTTAGCTCTGACGGGCGGCTGATGCTACACAGGTACCATCTCGGCTTCATCCTCTCTACTGTAGGGAAGGCCCAGCAGAACATGGCATCGCTCGTCGACAGCTTCGAGAAGGCTCAAAAAGCAGCCAGCCTCAATAGAGACTTACTGAATCTCTACCATTCCCCACTCTCAGCCTCAGCACCATCTAGCTGGCCACAGGCTGTTCTGTGGTACCTTACAGATCTGGCTCTGGTAAACTCATGGATGCAGTACAGGCAGGATCATGTTCCTCTGCCTGAGCCTCTGAACCTCATGGCATTCAGGCTGGAGGTCTCCAAGGCCTTGATCCTCTCCAGTGGCTCAGACACCCAGGACGCAGCCCCTCCGCACCCCCCTCAGAAATTACACTCCCCGAGCACAGCCCCAGATCCTGGCCTGTTACAGGATAGTCCTCTCCCTGACGTGGCCACGCGGTACGACGGTTCGGGCCACTGGCCGGAGCAGCTTGGGGAGGGAGAAGGTGGCAGGTGCCGCTTCGGAGGCTGTGAGCGAATGTCTCGCGTACGATGCCTCAAGTGTTGCgtgtttctctgtatctctcgtaACCACAACTGCTTCTTGAATTTCCACAGTCAAGGGAGTTTTTGAAGCTGATAAgatttctgtttttctttttaattggtgcatgttttatttaatgctatgtttagctttttttttgtatgttttttttttattttaggttAGAAGCTCTGATTTAATCATTTCTCCCCCTACACCATAGTTTTGAGTGCTTCTCTCTTTTCAGTGTCACCTTTAGTTCTGTGCTGGAAATTAAGAACTTGGTCACTTTTTAGCCTACTGTGTAAATGTAATCTTGATGTATGCAATGGCTTTTGTTGTATGAAATTACCTACAAAAGAAAATGTGAATAGAGAATTAATGATAACCATAAAGTCAATGTCTCTGAAACCAAGTGAAAATACATTTGAAGATGTTTTTGTAATTCTCATTTTAAAAAAGTGCTGCCTTTTTTTTCCCTTCTGAACCTTGTTTTGTTGTTTACATGCCAATAAGCTTTTGCATGTGTTTTTGGCGTTCTTTGTAAATTGAATAATTGAGTTATTTAATACGGTTGGAGCAAATACATGTACGTTTTCTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259080 lncRNA downstream 35861 13828830 ~ 13904843 (-) True G226504
TU259168 lncRNA downstream 39961 13900363 ~ 13900743 (-) True G226571
TU259100 lncRNA downstream 81865 13847444 ~ 13858839 (-) True G226524
TU259063 lncRNA downstream 155945 13781619 ~ 13784759 (-) False G226492
TU259190 lncRNA upstream 31107 13981337 ~ 13981641 (-) True G226593
TU259191 lncRNA upstream 31660 13981890 ~ 13982242 (-) True G226594
TU259193 lncRNA upstream 33256 13983486 ~ 13983797 (-) True G226596
TU259194 lncRNA upstream 33647 13983877 ~ 13984102 (-) True G226597
TU259202 lncRNA upstream 83391 14033621 ~ 14033969 (-) True G226605
XM_021591718.2 mRNA downstream 146 13931847 ~ 13940558 (-) True LOC110510327
XM_021591719.2 mRNA downstream 299 13931847 ~ 13940405 (-) False LOC110510327
XM_036975395.1 mRNA downstream 12843 13909746 ~ 13927861 (-) False wu:fe05a04
XM_021582128.2 mRNA downstream 12850 13909746 ~ 13927854 (-) False wu:fe05a04
XM_021591709.2 mRNA downstream 31330 13906345 ~ 13909374 (-) True LOC110510306
XM_021591698.2 mRNA upstream 13619 13963849 ~ 13980926 (-) False si:ch211-261d7.6
XM_021591689.2 mRNA upstream 21549 13971779 ~ 13980646 (-) False si:ch211-261d7.6
XM_021591682.2 mRNA upstream 21549 13971779 ~ 13980927 (-) True si:ch211-261d7.6
XM_021591765.2 mRNA upstream 36412 13986642 ~ 13992932 (-) True zgc:66448
XM_036975390.1 mRNA upstream 44966 13995196 ~ 14003872 (-) False LOC110538195
TU259125 other downstream 12871 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 596329 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 716189 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 760432 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 873347 13066873 ~ 13067357 (-) True G226124
TU259117 other upstream 49506 13999736 ~ 14001808 (-) True LOC110538195
TU259726 other upstream 478563 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 572950 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 573026 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 648559 14598789 ~ 14636710 (-) False LOC110503689

Expression Profile