RNA id: XM_036975392.1


Basic Information

Item Value
RNA id XM_036975392.1
length 5375
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110538195
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13995196 ~ 14023153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACCTTGGTGTAGACACCAGGCTTGTTCCTCTGGGCACAGCCGTAACCCCAGGACACAACACCCTGCAGCTGACCATTGCACACCACGGGGCCACCGGAGTCTCCCTAATAGAGCGATGGGGAAACAGAAATTAAAGTCGCTGTCCTCATTGAGGATAACAGGATTTTCGGAGGGTATGAGTGCAGAAAGAACTCTGCATCCTACCAGGCATCACTGCAGTCTGGTTACCACTTCTGTGGTGGCTCCCTGATCTCCAGCACATGGGTGGTGTCTGCTGCTCACTGCTACAAGTCATATGTGACTGatgaacatttcttcaaaaacATTGACAGTATGTTTGACATTAAACCTTTTTTGTACATCTGATTAACCCTCCCAGCCACATTCAGGTGTGTCTACGTGACCACACAACATTGTCGTCAACGAGGGCACTGAGCAGTTCGACTCAGGGAAGGTCATCATGCACCCCAGTTACAACAGCCGCAACCTGGACAACGACGTCAAGCTGAGCATGCCCGCCTCCCTGAACAGCTACATGTGCACTGTGGTCATGCCCTGCCGCTGTGCCAGCTCTGGCACCCACTGTATGGGGCAACCTACCCAGCAGAGCCTTCTACCCCGACCAACTGTTCTGCCTGGATCTCCCCATCCTGAGCAGCGGCAACAGCACCTACCATGGACAGATCAACTCCACATGTTCTGCGCTGGCTTCGTGGATGGAGGCAAGGACTCTTGCCAGGGAGACCGTGGTGTGCAATGGGCAGCTGCAGGGTGCTGTGTCCTGGGGTTACAGTTGTGCCCAGACTAAGATCTGCAACTCCTGGATAAGCAGCACCATGTCCTCCAACTAATTGATTTAGACTGGAAGAGACCCATGATAACTGGTATGAGAAAATAAAAACACCATTCTTTAAAGTGCATTACTATGAGTGCAATATGTGCTTTTAGGAAAGTATGAAACAGGTATCTGGCTAGTGCTTATTATGTCTAACTTGTAAAGCAAGAGTTGCAGACAACAGCTCAATCTGTTCAATGCCAATTGTGCACTGTTAGCTGGTGAGCCGTTTCCTGGAAACTTAATGATATGAGAATGAACAATTGTCAGTGGAAATATGATAACACATGAACTAGAAACTGCAATAGACACGAGTAGAACATGCTTTGGTTTCTCTTCATAGGTTAATTCATGGAAATTACACAAATGTAGTCTTTCAGTTGTacagaaaacattttaaaatgtagaaTGTTGACAATATGCATACAATGAACCTAAATGTGGAGCATTCCAATTGTGTAGCTATTTAGCTAAGACATAATGAATAAAGGTTTGTGTTCGTTTGTCTGCTGACTTAAATTGGTGAACTTCAAATGGCAAATGCCTCTTCGATGAGGTTTAACAGCGGCtggtatccaataaatgttgcattaccaccacctactagactggagtacaactcccttatacttcgcttgaaaaaaataagtaaataccctaccatctaacactacactcataacaccaccatactccactatttaaatatatttagtctGACCTCAGGCCAAGAACCTGAAAGAatgggacaccaccacttaacacaccctgtaactctgaTGTCAAGTCTCACACACCAAAAGATCTCTCTGCTCAGCTGTCACAACCTCAACTTTCTGCGACTTATGTTCCATCCCTGCAGGAGTTGATGACCGTTGCTATAAAAGCTAAAACgccaatcttactgaaacatatcacttgttggcctctctctgtactggtacagatctactactcgcaccactcctctcaggatccctcccccttgacccatattcctctactttcttcactgcctcagcatatgacaacttctgcactcctctaaccctggaaacctcaacctgcctctctcacacgGGCCATTTCTCATCCCCACCTCCATGGGCACCcttacaattaacacataccactactttccccaatgctacacattcctttgtctcatgcccttctgcacacttctcacacctacaAACcttcctcctacacactgctgacACATGGCCATAAGCTTGAGACCTGTAAGAAAGTAATGTATTCGGCACAAAAGGTCGTACAGGATAATATAATATCCTGTCACTTTGTCGGGCAAAGaattcaaaactcaaaagaacagattATGACTTCTGTTTCACCACTCCTGCCACCCTGTCTGCGTCACACCAAACGACAACCATCACAAACACTGGGAATCTTCCCTTTCTGTTGGTCAACTTGTACAGTTACTGCTACCCCAGTAATCATAACTTTCAATGGCGCCCATTTCTTGAGAGCAAATCACATTTCTTGCCTCCATTTGTTTAACGCAGAGAGCCttctccctctgaccagcagaaacacaaacaattatcacaagaccagTTCTGGTTACCCTTCCTGATTCTACAGCACAAAACTATGTTTTCaaccaccctgaaaccacaaatggatcagccaaaaggcaagggtccacTTGTAACAAAAACGTCACTCCTAGTCCCAACTCATCTTTATTCTGACCCTCAGTGCAAGCCTCAGCCCCgagaacttcaccacacctaccacctccGATGCTTCGACCTCATTGACTTtcctttctcctcctgtcttcagctcactctgcttacactttctaaCATTCTTAtttaacaaaccatctccctttttTCCGCCATTTTTAGCCGACTCAAGTTcaccctcttccttcctctctcttagACCTCCTCTGCCCTCCATTCCCCCTTCGTATTCAAAGTATACGTCTCCTTATGCTAATACTACACTTCTCCTGACATACAttttgttattgcattataaGCAAATGCTTTACACATTCATATTCCTTTATCTAGCACTGGGAACATGTGACAGCGGAATGGTGACGTAAATATTCAGCGACGCTCTACGGTTTGTGTACAATTTCAAGCTTGACGGAACGGTTACGTTTAGGACAATTGCATCAAATGtgtctttgttttgttttataatCGTGAGAATTCCCTCGATCCTCTATTTACTCAAGTCTATCTGCACATCTCTGTTGATGGGTACTGTCATAGTTGTTTTTGCACTAATATAAAGGAATTTAAATTATAGTTTTCAGAGAGAGTACATGTCTCTCTTGGCCAGCTTTTACAGTTGGATAACGTCTGCTCCAGGACTTTAGCTGTAAGCTACCTGGTATGAATTAATAATATATTATGCAAACTAATGCACATTACAGTGAATGTTGATCTCAGTATGTCCCTGCACAAGATGCTCTCCTAGCGCCCCTATTTATTTATGTGCCACTTAGTTGTAGCCTGTGAACATATGCCTTATGCTGCCCCCACTGAAAGATTAGTTAGTTGTCAGGCAGATATTGCTCGTCCCCAACAATGCTGTGGTACGGCCAGCCATCTGTCGCTGTGTGAATGGAACTGTCAGTTGGTCCGTCTGTAAACCAGGCCTGACTCATGACTGAGTACTACGAGGAGGGGGGCCTGCTGTACGAGCACTCGCCTCCCATGCACATCAAAGTGGAGTCTCCAGAGGGACCCTTCGGAGGGGGCGTCTCAGAGGACGGCTTCCCCAAGGAGGATGAGGACTCGGAAGGCAGCTGCGACCAAAGCAGTGGGCTGCCTGGTGGACTACCCTTCAACGTGGTGGTGGTGCATCCGAACATCATGACCCCTGGCATGTCCTCAGATGACCTCCTATCCATGGAACAGCCAGGGGGTGCAGGCAAGAGGAAGAGTCGTTTTAGCGGTGCAGAGCTGGAGGTGCTGGTTTCTGAGGTGACGCGGTGTGAGGGAGAGCTTTTTGGTCCTGCTGGGAGGCTCCggcgcagggagagagagaggatctggGCAGGGATCCTGGAGCGGGTCAACGCTGTGTCCAGAGTCCCTCGTACCCTCCGCGAGGTCAAGAAGCGCTGGGACGACCTGAAGAGACGCAATGGAGGCAGGCTGGCAGACGCAAGGCACCGAACTTGTTACCTGCCATCTAATAGAGGGGCTTCCATGCTGGGACGGTCAGCTCAGGCAAGCCCCAGGCTTCACCAGGCCAGACAGAAGCAAAGCACCAGAGGGAAGGCCAGTTTCACGTGCTTCACTGATACAGAACCAGTGGGTGGAGGTGAAGGGTCGGAGAGGGATGGCTTTGAAAAGGATGAGGATAGTGGTGAGCGGGAAGGGGAGGTGGGAGAGGCGGAATGCGAGGGGGCAGAGAGCAGTATGGAGGAAAAGCTGGGTTTAGGACTGGGAATAGGGCCTCCCCCTAACTCGGAACGCtggctgcctccctctcccctctacagCGCCCCTTTCCTCAATGGGACCCCTCAGCCTAGTCCCCAGCCCTCACTAGGGGCCCAGCAGGGACCCCTGGAGGCCCCTCCTCGTGGCTCATGGCTGGAGGACGAGCTCCGTGGCATGGGGGAGGCAGCTCTGCAGCTGGGGGATCGGGTGGAGCAGAGTCTTCGGGAGTTTGGGGAGGGATTCAGACGTGATATGAGAACATTAGTGGTCTCTCAAGAGGCACTGGCAACCAGCCTACAGCAAAACAATGTTCTCCTGCAAAGGCTGCTGGGAGTCCTAGAggcacagcagcagcaacaacaacaaccaccacagcagcagcagcagcaacaacaacaaccaccacagcagcagcagcaacaacaacaaccaccacagcAGCAGCCACATCATTCCCAAAAACAAGAGCCACAACAGTCAACGCAACAACCACAACAGTTACAGCAGCAGAAACCACAGCCTCAACAACCgattcagcagcagcagcaacaacagatacaaccacaacaacaacaattgcTACTACAGCAACCCCAGCtggtgcagcagcagcagcaacaacagataCAACCGCTACCACAGCAACCGCAACACCCCCAGAGTCCAAGTAATCAACCAACTTTAGCAGTTGCCCCTGTACCACCACCCCCAGATATTCTTGATGGTACCACCCGTCCAAATCCACCCGCAGTCATGAATGGAATTGTCCAACGGCCAAGGCGGGGGAGAATTGTTGATCATAGACGAAGAAGAAGGCGTTAGATAAAGAGATTTACATAAGCTTTGATgtactttatttattttctcttatACAATCTGATTTGAAATAATTGTGTCCCTCTAATTTCAACCAATGCTGAAAAAGTTGTTTTATGAGTACATTTGTtgtgtaaagtattcagaccccttgactttttccacattttgttacgttacagccttattctaaaatggattaaattaatgtttttcctcatcaatacaccataatgacaaagtgaaaacaggttttaataaatgtttacaataattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259194 lncRNA downstream 11094 13983877 ~ 13984102 (-) True G226597
TU259193 lncRNA downstream 11399 13983486 ~ 13983797 (-) True G226596
TU259191 lncRNA downstream 12954 13981890 ~ 13982242 (-) True G226594
TU259190 lncRNA downstream 13555 13981337 ~ 13981641 (-) True G226593
TU259168 lncRNA downstream 94453 13900363 ~ 13900743 (-) True G226571
TU259202 lncRNA upstream 29749 14033621 ~ 14033969 (-) True G226605
TU259258 lncRNA upstream 121191 14125063 ~ 14126065 (-) True G226643
TU259263 lncRNA upstream 129418 14133290 ~ 14133632 (-) True G226648
TU259264 lncRNA upstream 130212 14134084 ~ 14134378 (-) True G226649
TU259266 lncRNA upstream 131623 14135495 ~ 14135725 (-) True G226651
XM_021591765.2 mRNA downstream 2264 13986642 ~ 13992932 (-) True zgc:66448
XM_021591682.2 mRNA downstream 14269 13971779 ~ 13980927 (-) True si:ch211-261d7.6
XM_021591698.2 mRNA downstream 14270 13963849 ~ 13980926 (-) False si:ch211-261d7.6
XM_021591689.2 mRNA downstream 14550 13971779 ~ 13980646 (-) False si:ch211-261d7.6
XM_021591671.2 mRNA downstream 44814 13940704 ~ 13950382 (-) True LOC110510265
XM_036975389.1 mRNA upstream 7898 14011770 ~ 14017804 (-) False LOC110538195
XM_021591782.2 mRNA upstream 7898 14011770 ~ 14017865 (-) False LOC110538195
XM_036975386.1 mRNA upstream 7898 14011770 ~ 14022842 (-) False LOC110538195
XM_036975388.1 mRNA upstream 7898 14011770 ~ 14022842 (-) False LOC110538195
XM_036975387.1 mRNA upstream 7898 14011770 ~ 14023153 (-) False LOC110538195
TU259125 other downstream 67363 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 650821 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 770681 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 814924 13177178 ~ 13180272 (-) True G226187
TU258665 other downstream 927839 13066873 ~ 13067357 (-) True G226124
TU259726 other upstream 424921 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 519308 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 519384 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 594917 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1532493 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile