RNA id: XM_036975388.1


Basic Information

Item Value
RNA id XM_036975388.1
length 7747
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110538195
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13995196 ~ 14023153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGCCAACGAAACGAAGTAAGTTGTATTTTCTCCACCTCGCTGCCGTGGATGCGTTCCAAAATTCAGCCTATAAGGTTATGAAATATGAATAAAGCTACGTAGCAATATTATAGCAAAGTTACACATGTCAGAATTTTAGATGATCGATGGCAGTAATATGAACGTGGACAGCAGTGACTCGCCGGTGTAAGacactccagagagaCCCTATTCTACATGAATCATCACATCGAGGACAGGTCAAGATGCAAAAGCGGAACTATATGAAAGGGGAAAGGGAGCTTGGTGATGGTGGACCCCCTTTTTGCTTTAGTTGTGAAAGGGTCTTTCCAGACCAAACGTCATTTCATGACCACTTTTGTCCTGCGGCTGGTTTCATCTGCTCCTGTGGAACAGAGTTCTCCATGTATGTTGATATGATGGACCACAGTGGGTTACATGAACCAGGCCACACTGTAATTAATTATAGCACCATAAAGAAGGAACAatatcagagggagagagagtacaagGAGCAGCTTTCGAGGCTGGTATTGACGGCGGGGCAGGGAAGCTGGGCTAAGCCTGGACCGACTCCGATGCTATCGGCCCCTATTCCACGAGCCACAAAGCCTCCACCTGGTCCAAGTGCCCCAACAACAGACCTCTGGCACCAATTCCAGCCAGTGGTGTTGGTGGAGACCCTGCGCAAGTTTGGAAGGACAAAGCCCTACAGGTGTGCCTACTGTGAACTGGGCTTTGCAACAAAAGACTTACTCGTATGGCACCACAACACTCACGCAAGAAATACAGTCCATGGCTGCCTGCGGTGCGGGGTTCTCCTGCTCAGTAACAACAAGTCACCACAGCCTGGCCACCACCAGTGTGGCTCATATCGGGCAACTCCTGAAACCAGATTCACCACTGCCACAGTGCTGAGCAACAGGAAACAGCCCGCGGGGTATGCTAAGAAGGTTGTCCAGCGTCAGCCGTGTCCGGACCCGTTCAGTGGGGAGCTGCAGCTAGGGATGCATATGGTCTCACAGCAGCCCATTCCAGGGACTTCTGGAACAAAATACTTGAAGTGTAGAGTGTGTCAGGAGCCCTTCCAAACTGTCAAGCTGCTTGAGAGGCACCGTTGCACAATGGCGGCATCCTTTTTTGCACAGGAACTGGGTCTGATGTCTGGCAAACAGCTCAATGGTCACAGAAAAGGGGAGGGGACCAGCCCATACTCCTTGCCTCAAAGCAATGGTGACCAGGAGCTGGCGTTCAACATTCAAACTTCAACGAATGTAACTGTATACGACCACAAGGCAGTAGGCCCGGATAGGGGCACAGGGTTGTCTGCCGTTTCTGTAAAGACTGAGGTTTCAGACGATGACTGTTTTGTGATTGAGGATGCGTTTtcgtgctagtcggaactaggaaactctgaaatttccgacttgctaactggttgaacaCAGCATGTGTATAAAAACCAGTTAGTAAGTCGGAAATGTCCgtgtttcctagttccgactagcacgtgaATGTGGCATAAAAGCTCCTTCACCAAACCAGGTCAGTTGTTATACCAACAATTAACCTCTTCCCTCCCAGTACTACAGACATGAACAGTGCAAAAAGCATTCCCAATGTGAACCCTCTGCATCTGCCACGGACATAAACATCTTCTATGGGTTATGGGTATGGTCCCTTTTTGTAAGGTACCGGCTTAACTCTTATCTAACTACTCAATTTACAACTAATCTGTCAGTAGCctagattttattttttaccttgaTTTTATTTTTCAGTTGTGTGTTTGTCAAATGACATTGAAAATGTTACATATGCAGTATCAAATCAGTCTGTATGGTTCAGATAACCACAAACATAGTTTGTCTTTTGAAAATGCGCTTGTTTTTTTTACAGTAGCTTTACTGAAAATGTGGTATAAGCAGCATTGGCCATATCACAAGAACATGTTGGTTCTTTCTAGCCATTTCTCTGGTCTtggaataaaatatttttttgtttccgctctctccctttcttttgtAGCAACTAAAGTGTAATAATCTGTGTGTTCTCCGTATTTCAGGGACCAAAGCAATAGCAGCAGCCATAAGTGATAGCTGGAAAAGGCTATAAGGACACTCCTGATctgcaaaacatttatttttctccAGAATTACTTAAATTAGGTTACGGTTAGAGGTAGGTTTTAAGGTAAGAGACCGTTTTAGATTTTGGTTAGTAGTTTTACaagtcagggtctgttatagccTCTGCCAAGAGAGCGTGATGGATATGTAGGTAATGTATTCACTGATTGCTTGGGATAGCTCTCTGACATAGTTTGTCACTTGTGAATGCACATAGCATACAAAAATAGGGGTTAGTCGTCGTAGAATATTTTGCCACCTCATGAGAATTGTATTATCACTGCACACAGTTTTTGGGTGAACTTGTTATTTTTTTACCCGGTTGTCCATCTTTGATGAGGTAGGCAGGCATCGCGACACCATTTCCGGCCTACCGGATGTTGAgtgaggagaaaaaaaacaattgaatcacgAATACAATAAGCTAACATTTAAAATTATGGCACACACCACTGTATCTCAACGTTGGCGAAAACATACATGTTATGTGCAATGCATTATTTATAAATATTGATATTTTGTCGGGTTTGGACTACAAAACGGTATGttgacattagctagctagctttcatcACGTCGACAGCTATCTAACTGGTGAATCGAGAACAAGTTTGCACTAACACATTTTTGGGTACCTGGGGACAGTAGTGGGGGTTACCTGGCTAGTTTGTGGTGGAAGAGGAGACGTGTGGTTTGAACAAAAGCTGGTTGATCGTTCTTGCCTGGGCTGTTATTGGAGGATCTACGTTGAACATTTATCTTTTCCTCATCAGTCCCGCCAGAGAGCCTGCCTAAAAATAAAGACAccATCTGAAGAGAAGATCAGCAAGGAGgtagacaactgccataacatGCCCCCAATGAAGGAGCCCTTACAAAGACCCCAACTACAGAGAGAAAGTAAAAGCCAACAGAACAAAGTGGTAGCTGAACCCTCTGACACACGGTCACTACCAGGTACCCCTGTTTCGGTTGTCCATCCTAATTCCAGAAAGGTAAACTCTGGTGACATTAATCACAGAAGAAAGCTCACAAAGACCCAGGCAAATATGGAGAAAATGCATGTTAATTCACCTGCTACTGGTCATGGTAGAACTCAATTTGAAAGTGCCAATCCTGAAGTGCATTTATCACTTACTGGGAGTGAGCAAACATTGAACTGTATCACAAAGGAGCTGGTGGGTGTAACAAGGCCAGCAGCGGTAGACGTTAGGAAACGTGGTCGCCCTCACAAGAAGGCAAAGATGCTGCATACTGTGCTACAAACAGTGGAGAGTTCTTCTCATCTGAGCACTGCAGAATCAAAGGATTGGATTGAAACAATGTCTGACAGAGCGAATGCTATTTCTTTTACTACAAACTGTGTAGAAAACAGGGATGACATGTCTCTCAGAGCTATTGAAACAAAAGCAATACCTCTAAACTGTGAACCAAGCAATACAGCGGTGTCTGTTCTTGACTTGTCCCCCCAAGACCATCAACCAGCTGAATCCAGCCCTGTGGCTATCTCACCCTTGGAACCAAAAAGAAAAAGGGGACGACCAAAGGGGTCGACCAAGAAACGACCAGGAAAAACCATGAACACTATTTCAGTGCAACAATCCCATGTAacagaagaaaaaaatgtaattaaaaaggAACCTGATGAGATGCTATCTGAAAAGGAAAAGAGAGGAAACATTGGTCCTCAGCCTGAGGAAACTCCTGTTGAGCCTAAACACAGAGTAGGACGACCACCAAAGAAAACAACACTCGTGAGGCAGTTTGCATTAGCACAGAGAAAGTCACAGAGAAAATCATGTTCTATTACAGCATCTGTGAATTCTCAGGATATTACACCACAACATCAGAAGATTGAGACTGAGCGTTCAGATTATATAGCAAGGCATGTGTCTGTGTCGCTTAGTCGCGTTGATTCTCAGAGAGGTGGTAGGTCAAGTGGGACTGCTGACATGATCTCTAATGTGAAGTGTGAGGATATTGAAATAGAGCTGGGGGATTTTAATTCCCTGGCACAGTCAAATTGTCTCATGTCTTTTCAATGCCAAACTGACACCAGTGTGAAGGTTGAGCCCTGTAATACTAGTTGTGAAGGCACTGAATTCAAAAAGCCACTCAAAGTTGACAAATGCAGAGGAACTGCTGGCACTGCTCCCAGAAAGCGATCCCGGTTTGTTTTTGGAAAAACTAAATACAAAAAAGGAAAGAGGAAAAGGTTCATTGATGCTAGAGGTAGACTCCAAAGTGTGATCTCACAGGGAGATCCAGACACCATGTCAAAGCAGGTCGATGAAGGCAATGGTGATGTTGGAAAGGAGATGGACTGTGGCGAGTCAGCTTGGGAGTATGAGGGCAACACAAATGACAGCTTTTCAAATGGAAGTAAGTCAACAGATGAAGGATTTAAAGATTTGCCTGAGAGTCACCAAAATCCTATCGTCACTGATGTAAACATATTAGAAACTATGTCGCATGAGTCCTTTTCGAAATCAGATGTCGTACAAGGTGAAGAATTTACAAGTAAGAAaatcaagaaagagagagatggtgtaggCGATGAAACTGAATATAACCCAACAAGCAGTTGTCCGAAGGCTAGGGGTCGACCAAAAGGGAGACCAAAAGGCACAGGGAAAACGTGTGAGTACTGCGGACGTCATTTTGATTTTGTGTCTGTATATACCGTCCATCTACGCACTCATACAGGCGAAAGGCCCTATAAGTGCATTGATTGTGACCAAGACTTTGCCCAGCTATCTAACTTAAAAAGTCATGTCAAGAAACATAACAAGCGCTGTCAGCCTCTGAAGTGTCCTTATTGCAAAATGAAGTTCAGTAATTCAGAGGAATTGCTTGCTCATTGCAAGTGGCACTCGCAGAACCCGAACCAGGACTCTGAGTCTGGGAGTAAAACGAAGGATAACAGAAAAGAGGCCACTCATACACCCCTTGTTTCTCTGAAAGAAAGGAGAAAAAGGGGAAAGGGGGGGATACTCAAATGCCACATTTGTGGGAAAGTATTTCCCTTTTGGTCTGGTCTGCAGGTTCATATACGTATGCACACTGGGGAAAAACCATATATCTGTAAAGTATGTGGGAAAGCCTTTAGTAATCGCTCATCAATTCGTATTCATGAGGTGACACACTGGTCCATTAAGCcttacaactgcacatggtgtggaaagagtttcactCAGTTGTCGTCTGCAAAAAAACATCCCTGCAAGGGTCTGAGGGAGAGTAATGACAGAGGGAGCCGGAAGAAGCCTTTCATATCTTTTACATGCCACATCTGCGAAGAGAGATTTGTTCAGAGGCGTCAGTACAAAACCCACCTGAAAACCCATGCTGGTGTGAAGCTCTTTCGCTGTTTATTCTGTGACCAGCTGTTTAGTGTGATGTCAGAATTTGAAGAGCACCACCAATATTGCACCAAAGTTAGGGGGGAGAAGATGACATCCAAATCTGAATTTAGGATTTGGAAACCTAGAGCCCCTAATCAGCAAAGCTCGCAGCAACCAAGTGTCAAGAGTCATTCACCAGTCACCCAATTAGTATTTCCTGCAGCTGCAGATAGTCAACCATTTCAGAACCTTGGACAGAGTTCAGCTTCCTCTGCCTCGTTGCTGAACTGTGAACCTAACTCGCAGCAAAAAAAAAGTGGTCGTCTGTCTTCACAAACACATCCCAATAAAGACATTGCTACAACTCTGCGCCCCTTCCAAACATGCATTATACCTACAAACAATCTCACCCCACTTGTATCAAAGTTGAACAGTCTAGATCGTAAATCTGACCCGAGGAAGTACTTATGCCCACGTTGTGGAAGACTTTTCAGACACACAGGAAGACTCCGAGCCCACATGCTAACTCATGCCCACAGTCAGAGCTACACCTGTGACTGCTGTGGAAAGACCCTGGAAAGCTGGAAAAAGCTTTGGCTTCACCAGCGAATCCACAGACAGAAACTAGGACGGTTCTCATGTCCAAAGTGTCGCCAAGGTTTCCGCTTCGTTGGGCCCTACAAGCAGCACATGCTGCGAGAACACCCTGAGTACCAGTGGATCGATGAGAGACCAAACAAAACTCTCCAAGGACTTGAACAGCAGCAGTGCCTGCCTTATCAATGTGAGGAGTGCAACACCAGCTTCAGGACACTAGATTTGCTTTTCAATCATCAGCTTTGCCATTCCTCACCAGGTGACCACAGTATGTGGATACAGGACGACTGCTATGATTACTCTCCCTCGACACATGAACATGATGTACCTTCCAACGTGAATGGATTTGACCCTCACATGAACAGTGGAGTAACACACTCCCATCAGGAACTCCACCATACCTACTACCCTTCTCCGCCTCTTCAAGCAAACCACCCACGAGGTTCACATCTCCTTCATTACTTTTCCAATCATTCAGACCTACTACATTCACTGTCACCCCTTATACCTGTGCCTCCCCCAATGCAACACCCAGGTTTCCAACCAGGCCTCCAGTTATATGACTCCACCCAGCTGCTCACAAGCCCTCTATCACCACTGTACTCACAGGTAGAGACCATTCCAAACCCTGACAGAAAAGATGGGAATGTAAACAGGAAGCAGAGTAGAATTTATGGGAATGCGACTAAACGTGCTGCTAGATCCAAGGAGGACAAGGCGACAATGGGGGGGTTGGATTGTGCGGAGTGTGGTGTTCAGTTTCCTGCTGTCTCGCAACTCTATGAGCATTATTTGCAGCATGCCAGGGGAGAGGTGTAAGAAATTAAAATGAGGGACCTTTTTCTAACACAAAGGCACGTTatcctcccatctctttctcagAGGTTTATCAGTTTAGAAATGGCTTATAGGTCAACTAACAAAAGCGGCATTTTTAACACATTGTTGTGTTAAATGTTGTATGTATTGATGTGTTTGAGTGAATATTCTGTTGAATGGAGATTGTTACTCTGGTTGCTTGTTGGTCGTTAGGGAAGCTGATTACTTTTGGTTGTTATTCGATTTACTTACACTATGATCAATTTTAAGTtgacagtattttttttttttttggcggGTGTCCCTTAATCTGAAAAGATGGTCAGTGCTTTTATACATTTGAGTAGCTGTAGCAGGTTTTGAGACGAGGACAGATCATGGCCTGCAATCTATTTTTCAATGGAAGTTTGAGTGTAAATTGCTATGCTTGATCATGGAACATTGTCATACCTCTTTTTGTCATTGTTAACCTCTTACTACTGTCAGACTCTGATTCTCAACTGATGAAAAATAATGTTGTAATTTAGCCTGCCAATACAAGTGATTAACATACCTTTTTATTTTGTCCATTTATTTCAAAGAAAATTAGAAACCTCGTATTTTGCAAGTTAGTCATTTATTCTATGGTTAAGTGTTGATTTGTAACTTATGCAAGAAAAATATTTTCACTGCCAATACTCTAGTCGTTTTACCTAATAGGCCTACATTCCCTCATGTTTACAGAAAGTTATTTTGTTTAGAAAAGCAGTTCTTGTTCTGTTGCTGATGAACTGACAgctgtttacatactgtatattttactTTCTAGTTTCACTCAGTTATTGTGTCAGATAAAAATAAAAGCCACCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259194 lncRNA downstream 27668 13983877 ~ 13984102 (-) True G226597
TU259193 lncRNA downstream 27973 13983486 ~ 13983797 (-) True G226596
TU259191 lncRNA downstream 29528 13981890 ~ 13982242 (-) True G226594
TU259190 lncRNA downstream 30129 13981337 ~ 13981641 (-) True G226593
TU259168 lncRNA downstream 111027 13900363 ~ 13900743 (-) True G226571
TU259202 lncRNA upstream 10779 14033621 ~ 14033969 (-) True G226605
TU259258 lncRNA upstream 102221 14125063 ~ 14126065 (-) True G226643
TU259263 lncRNA upstream 110448 14133290 ~ 14133632 (-) True G226648
TU259264 lncRNA upstream 111242 14134084 ~ 14134378 (-) True G226649
TU259266 lncRNA upstream 112653 14135495 ~ 14135725 (-) True G226651
XM_036975390.1 mRNA downstream 7898 13995196 ~ 14003872 (-) False LOC110538195
XM_036975391.1 mRNA downstream 7898 13995196 ~ 14003872 (-) False LOC110538195
XM_036975392.1 mRNA downstream 7898 13995196 ~ 14003872 (-) False LOC110538195
XM_021591765.2 mRNA downstream 18838 13986642 ~ 13992932 (-) True zgc:66448
XM_021591682.2 mRNA downstream 30843 13971779 ~ 13980927 (-) True si:ch211-261d7.6
XM_036975384.1 mRNA upstream 3260 14026102 ~ 14036041 (-) False LOC110510454
XM_036975383.1 mRNA upstream 3260 14026102 ~ 14039522 (-) False LOC110510454
XM_021591831.2 mRNA upstream 3260 14026102 ~ 14040817 (-) False LOC110510454
XM_036975382.1 mRNA upstream 3260 14026102 ~ 14040817 (-) False LOC110510454
XM_021591824.2 mRNA upstream 3260 14026102 ~ 14040825 (-) False LOC110510454
TU259117 other downstream 9962 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 83937 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 667395 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 787255 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 831498 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 405951 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 500338 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 500414 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 575947 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1513523 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile