RNA id: XM_021591752.2


Basic Information

Item Value
RNA id XM_021591752.2
length 9519
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110510454
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14026102 ~ 14078985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGTTCTAATAGCATAGAGTCATAAATGTTCCCGGGGTTCGGGCACATTGTGTGATTCGAtaaagaaaaaaacaagaaaaaaatatatttctgaaAAACGACCAAATTATCAATATGTTCACGGAAATGTCTAGCTAGGTAGTAACCTAAAGCATCGTGGGACCGTAGATAACAACAGGAGTCAGGACGGCGGTACGCAATACTGCATTGCCTGCTTCATGGGTAAATGTAGCGTTACCCACATCAACCTGGACCCCATGCACACATGCTAAAGCAGGTGGATTGGGTGTTGGAAAACAGTGGTCCCAGGTCCCCTGTGGAGGTCGAGCATGGCTCAAGGATTTAATACTTGTTTTCGTAACCTTCCACCATTGTCGTCGGATTCAAGGACTTTGAATGTGCCTTCGGATTCTGAAGATAGTTTGGCGCACCACCTTGAAAGCCTCATTGAGCATAATGACCTTCCCAACACCGTGGTTTCGCCAGAGAACATTTCCTCGGACTTGAACTTGAGTTCAAACTTTTTCTCAAATTCCAATACTAGTTCTGATTTTGTACAACAGAAATACTATGATGATGTCGTTTGGCAAGATGAGGGTCAACCAGTACATCATGAAGGTCAGTTTAACCACACAAGCAACAGCTTCTTTACCCCAGCTAGAGCAGCCAGTTCAAGTAATTGCCTCTCAACTTCAGGTGCAGACCTAAACCCCCATGATCTTAAACAAGAATGTGACTTATTGAACCCTTCCATTCCGGAGGACTACTCAGATGTTAGTAGCTGCTCAGAGTCTGATGTTGATAGGACAGGGCCTTCTTGTAAAATGTTAAAACATGGTTCAAATGATACTCCACTAGTTGCAGATTACAAGAAGGAAAATGAATGTGCATGGAAGAGCCCAGAGACCAACACAGGTTTCCCAGAAAGCATGTCTACTTCAGAGAGTGAGGTAGAAGAGGATCAAGATGAACCACCAGATAAGGAAAAGGAGACATTCATGATGCGAGAGAATAAATACTCAGAGACCTCCGGTGCTCCAGAAAGCCTATCTGTTTCAGAGGACGAGGGAGAAAAGGATCATCTGGATGGAGAACCACATGGGAAAGATGAGGAGACTTGCATGGAGCAAGATGGTCAACACACAGATTCTTCCTTGGGTGCCGAAGAAAGCCAGACTGCCTCAGTGAATGAGAGAAACGAGGAACTGGATGATGAAACACAGAATGCAGAAGAGGGTTGCATGGAGGAAGATGATCGGTACTCAAATGTCAGCAGCCTAGAGGGCCAAAATGAAGGAACCATTTTAAGAGAGAGCtttaaagagaaagaggggaattCATTTTCCCAAGGAACTATGGACTCGCAGGGTATCAATGCATCCAACGCTCAAGATTCTGATAACAAGCTGAATGATAATACCTGTGCCTTTGAATATCAGGATTCAGTTAAGGATAATGACTCTTTAAAGGTTGCTGGTCAAGAAAATTGCAAAAGTTCCTCTGTCATTTGTGGATTAGGCCTTGGGGGTAGCAATCAAACGTTTGAGTCTTGTTTGGAATTCCCTGAAAATCAATCATTGAAAACTAGATTTCAGGAGATCGTTGGTAGTGGCACTCAAAGTACAAACTCAACCTATGAGGAAAGTGCAAGTGGAGGGAAAGAGGGTCACAGTAGCTTTGATTTTTTGGAGCGTTGTTTAGGTCTGAACAACTTTGGAATTGAACAAAAGTCCTGTGTTGAAAATGAGTGGCTAAGACCAATGGATGAGTCAAATGTATCGTCTTGTTTGGAAGAGGACCAGGCATCCCAGCAGAACCTAATGCGCCATATCGAGCCACCAGACCTTGTGAGAGCTGGTCTTGAAAACACAAGAGAGACATTTCATAAAGTATTCACGGCAGATGATGAGCAAGAACCCCCAGTGCTAAGTGAATGCTACTGTGAACCATTGTCAAGAGAAGATTGTATGCGTGACACAGAGGGCAATCTGGAAGGGGGGGAGACCGGGTCTATTGATTCAACTGGGTTGAACCAGGAGGGAGAAGATTCAACCATTGATAACATTGAAGACGAGAGGGATTTTGAGGACCTACCAGCTCTGTTGAAATCCTCACTGCATATGAGGAAAAGCATGCACCCTATTGTACTGCTCAGGAACTTCAAACTAAAAAATGACACAGATGTGGCTTATCAGTGTGCAGCATGCCAACAGGCTACACAAAGTATAGACCATCTAATTGAGCACCACCATTGTAACCACTCTGAGAACAAATTCAATTTCTGTCAGACCTGTGGTACTTACTTGACATGTGATTCACTAGCCAAGAAACATCAGTGTGGTATTATTGATGAAAATGCACAACTCTCTTCTAATATGAAACCCCAGAAGAGAAAATCAACCGGGCATGCTTTTCACAAATGTAGATACTGCACACAGACATTTTACAGACTGTGTGACTACAACAAGCATGTGCAGAGCCACTCGGGTAGAACTGAACACACGTGTCATAGGTGTGGCTCTAACTTTTCACAATGCCGTAGCCTGAACAGACATTTACGTGAAAAGAAATGCCGGCGTCGAAGTTCACAAGTTCCTGTTAAACAGATTCAAACAACCCCACGTCTCAGCATTTACAAAAAGGGAACTGTACATCCATATGTCCTCCCACCAGACAGCCCCTATGCCAATCTTCCAGATTGTTTTGTGAAGCTAGTGGACATTTGCAAGGAGCATGTTTGTCGTCTTTGTGGGAAAAGCTTTGCAAGCAGTGCAAAACTCTACAAGCACGGATACAATGTACACCATACAAAAACCAGGTCATATAACGTTCGGCCTAAGTGTCAGAACACATACAGGTCATATAAGTGTCAGAAATGCCTGATGACATTCAATTATTCAAGCAATTTTAGCAGGCACAAGAAAAGATGCAAAGGAGCTGAGACGAATGAGAAATTCAAGTGCCCTCTTTGCCCACGCCTTTTCAAATATTCCTACAACCGGTCCCGCCATTTGCGCGAGCAGTGCATTAAAGACTTGACACAGGGAAGCTCGGGGAAAGTTGAAATGAAATTTCGATGCCCTTTCTGCACCACAACCTTTAGTAATGCATCTAACCGACATAGACACATAAGACTGGTGTGCCTCAAGGAATATATACACAATGAGACTTCAAGGACCAAAGCTGAACGCCAGGAAAACATGGCCCAGAAAGAAACACAAAAGCCGCCACTGAAAACGGCACTGAATCGAAATGAGCCGGGTCTCAAATGCAACTACTGTCCAGCCGTTTTTGCTTATTCTTCTGGAAAGTACAGACACATGAGGAAACATAAGTTATTTGAAAACACTGGAAAAAAGATCAAGTTCAGTTATTCAAACCTAGTTCCCATTTCTAACAAGTCCAAGGCTAGTATTGAGGACCCCAAAGACGGTCCACTCTCCAGTGAAGTCAGCAACCAGCCCTTTTCCTGTCTCTTCTGTGGAAAATGGTTCAACACTTCATATTCCCTGAAGAAACACATCTGTAGTATGCACATGGGTGACAAACCATATCGCTGCCTGGAATGTGGGAAACGTTTTGGGAAAGAAATCCATCTTGTCGCTCACAAAAAAGTGCACCAGCGAAGGATACAGTGTACTGTTTGCAAGAAGATACTTCCTACCATTGGGGACTTGATTCAACACAGGCAATCTCACATCAAAAAGGGCATGCTTCAGTGCCCAGACTGCCCATCGCAGTTCCAGTACCCAGTGTATCTTCTTCGACATATGGCATCACATCACAAACTTCAGCAAGAGCAACCACTCAAAGAGAAAAAACAGAGGCACCCCTCAAAACTTGAGCCGCTTGAGTCTTTGCCACCACTCAAagagcaggaagaggaagaaaaGTTGGGGTGCCCCCTATGCCCAGAGGTCTTTCACAGTGGCACAGAACTGAGTAGTCATTGCCTAAACCATGTATCGGAGTCCTCTTCAAGTCAGTGTCCGTTTTGTAAACGCCTCTTCTCTTCCCGCACATCTTTGGTACGCCATATACGCATTCATACAGGGGAGAAACCATTTTCTTGTCAGAGTTGTGGAGAACCTTTTCGTCGAAAAGAGTATCTCCAGTTGCACCAAGAAAAGTGTCCAGGTCCACAAAGCAAGCAAGAACTGCCCACTATTAAAGAAAGTGAAGAAGTCTCATCAAAATCTTTGGTGACAAGAATTAGGAAAGTATACAAATGTTCATACTGTCCTCGGGAATTTGAGAAATTGCCCCGTTTATTACTGCACCACAATGGCCACATGCAAAATACAGTAACCCCCTGTCCGAAATGTGGTAAATGTTACAGACAAAGGCGCAAGTTACATGAAAGACTTTGCAATGGCTCAAACATAAAATCTATAGAGCCAGTGAGCACTGTCTGGCATCCTTGTAGGAATTGTGGGAGGAAGTTTTCAAGGGATTATAATCGAGATGTCCATGAGAGGATTTGCCACTCTGTAAAGCCCTTGCAAAAAAACACCAGCTTTTCTGGCAACTCAAACATCCATCCTTGCAGGAATTGTGGAAAGTACTTTACAAGGAGTGATAATCGTAATTTTCATGAGAAGACTTGCAACTCTGCCAAGCCCTTGCAAAACAACACCATAGAAATTGGGACCAGTAGCAGGGAAAAGTTGCAGCACAAATGCCCCCACTGTCCAAGCAAGTTCAAGTACAGAAGTTTTCTCCTGAGACATATTGGGTCACACACTGGAGAAAGATCATATCCATGCATGCACTGTGGTCACAGCTATGGAATCCAGTCACGATGCTTACAGCATGAAGCTTTCTGTGATGGTGTTAATAGACAAAAGCCACCAAGCGCCAGCCTTGGTGAATATAAGTGCAATATCTGCACAAAAATCTTCATGAAATCCCGAAACTTAAGGCGGCACATCCTAACGCACACAGAGGTAAAGCCATATCGCTGTAAGGCCTGTGACAGCTGTTTCTCCAGACATGATCATCTAAAACTGCACCAGAGTCGCTGCAAAGGGAAAAGACAACGTTTAGAAGTTCGCATTGCCAAAATTAGTCTGGCAGATGTTGGAATGGGCTGGCAAAATAACCTGAACATTACTGTTTCAGGAAAGCAACAAGGGTTTGACTGCAGCATATGTTCAAAGATCTTCCCCTCTCACAGCATTATGGCCCGACATATTGCCATGTCACATGCTATAAGAACCGTCAGTTCATTTACTCATGAAAAATCGCTTAAGAGACATATAAACATTGGTGCATGTCAAAGAATTTATGCAAAAACAAAGCATTCAGAAAAGCTAAATGTTACAAGCCCACCATCAAGAGAGACAAACCGACTTCTACAGAGGATCCAGCTGCAATATAAAGACAAACGCaaattcaaatgtactttttgcCCTCGCCTTTTCAAAAGTGGTGAGCAATTGAGGGTGCACACCCGCTTGCATACAGGGGAGAAACCTTTTGGATGTTCTAATTGTGGTGAGAGATTTATCCGTAGGGACTACCTGCAGCGCCATTTGAACAGGTGCAAAGGGGAACCTCTTGACAGAGTGCTTTGTGACAGATGTGGCGACGTATTTTCGCAAGATGAACTCGAGAACCATCAACTGACATGTGTTGTCAAGTGTAAATCACCTGCCCGTAGTCGAACTGAGTCCACTGCTGGCAGTccaccaaaagggttctcctgtgcTAATTGCAGTGCCCGCTTCTTGTTGTTCTCTCAGCTCCAGCAACACTTTCTCAACACGCATAGAGACGCTCCAACAAATCAGGCTTCACCTCTACAGGAGCAGTTGTCTACTATGAAGAACATAAAAGAGGAGTCTTTGGATGAAGGATATGGTGACACTCGGCAGAATAGTGATAACAATCTCATGCTTGATCAAGACAGTGATCGAAATAATGATATGAACAAACCCATTAAGTGTCCACAGTGCAACATGAACTTTGGAAATAAGGGTGGATTTGCCAGACACATGCGTACACATTTAGGACAGTACCCATTCAACTGCAAGAAATGCAGTAAAGGCTTTTGGAACAAAAACTTATGTCGGACACATGTAAGGAAATGTAGACTTGTAAAGGTCACGAAAGAAGAAGTTAACACTGACTCTGTAATTACTTCAGAGATGGATCCTACTCTTAAAGAGACTGTCCTAGTCTTCAACCAAGGTTACAAAACAACAGGCACTGGGGTTTTGCAGACTAATTTCTCCTGCAAAGATGACATGAAGGATTTAACACTACAGAGTGCCTCTGGAAATCAAGGCAAAGGAAGATCTTCCAATGATAGAATAAATAGTGGTCAACAAGTCCCAGGCAACAAGTACCAGTGCTCAGAATGTGATAGGAGTTTCACAGATGGGCTTCTGCTCATCAGCCATTTAGAGGACCATGGGCGCGAGGAGCTAGAAAGAAAAAAGAAATTCTGCCAGCCTTGTGGTAAGACGTTTGCTAATCCTTCAGACCTAGCAAGGCATATGAGAGGCCACTGGAATGAGAAGACCTTTTCTTGTCCACAATGTCCACAGACTTTTCCCTGCCCTTCTGACCTTGACATCCATAGAACTTGTCATGACTCAAATAGACCATTTGTCTGCAAAGAGTGTCAACAAAGGTTTTGGACCAGTCAATCTTTAGAAAACCATCAAAGCCAAGCTCATTCAAAAGAACGAATTTATACATGCCATGTCTGTAACAAGAACTATTCAATCAGAAGTTCACTTGTTAAACATATTAGGATGAAGCATCAAACCCATAAGAACATGGATGTTATCCACGTGAAGGAAAAGGAGACAGCAGTGCAAGAGGAATTTGACATGGAAGTTGATGTGGATGGAGGAAGTAATGATGAAGATGAAAATGATGCTAATGAGGACAATGACTCTGACTCTGCAGACTACTTCCCCTGCCATGTCTGTGGGAAAACGTTCACCACATCAGAAAGCCTTGAGGATCACCAACGCTGTCACCTCGGTGAAAAACCTCATGAGTGTGCAGAATGTGGCAAATGTTTTTTCCAGGCAGGGCAACTGCAACAGCACCTTCGGAGCCACAAGTCTGAGTATCAGTGTCAAATATGTGGCAGAGGTTTTGTCTCACTCTTTGCCTTACGCAAACACAAGCATACTCATGGAAAGAGCCGTCAACACCGTTGCTCCAAGTGCCCGCTCAGCTTCACAGGGCCCTCGCAGCTGGCAGAGCACATGGGCACCCACCGCGATGACAATTTCCCTTGTGATATATGTGATCGCACATTCTCCTGCAAGATGAGTCGGGCAGAGCACCGGAAAATCCACATTGAGACAGAGGATGTTCCACCACCTTTACTTCCTCCAGAGAAGACTGCATCCTCCTCTTCTActgcctcttcctctactatGAAGCACCTTCAATATCGTTGTGGGGTTTGCGATGAACGTTTCAAAGAACCCGAACAACTGTCTGAGCATGGGTGCCTGGCTGCCAGAGAGCGACCTTATTCATGCCAAGAATGTAATAAGCATTTCTTGCATGCATCTCACTTAAACAAGCACGAGCTCAGTCACTACCAAATACCACAATCATACGTGTATCGGTGCAATCAATGCCACATGAGTTTCAACTATCGTCACAATTTTGTCAGTCATTTAAATGAACACGGTGACGATGAGGCTGCAGCAGAAGCTCTGaaaggagactcagtgacaaatGCTTGGGAAACTGTTTCAGAGAAAAGAACCATTTACAAATGCCCAATTTGCTCTCACATGTTTGCTCATGCCATAGAATTGGCAAGTCACCTTTCCATACACTCTGAGAACACGTTTGCTTGCAGTGTTTGTAAGTTGACATTTCCCACCAAAAGCAAGCTTGCTGAACATGAGCGAAGCCATCTGACTGCTGCAACACAATACGAGTGCACGGAGTGTGGTCAGAGCTTCTTGGGCAGTGATTTCCCCCACCACCACTGTGCACGTCGGCAATGTGCTGTGACAGCCCATGAACTCCCACATCTGTCTAATAGAAAGTcaatggaggaagaggtggatgTTGGGGAGGACTTCTTTAATTGTACTGTCTGCTTAATGCGATTCTCTTCTCGCGGTAGTCTCCAGCAGCATCTAAACAAAGAGCATCACAATGAACGGCCATTCAAGTGCCAGTCTTGTGGAAAGACCTTTGCTCTGAAGAGATATCTCAGAGACCATGAGCGAAGACAACATAAGTTTGGCACTGAACGAGCCCACCCGACATACAAAGCCACGGACAGTGTAAGCCAGTACAAGTGCTCAGTTTGCCCCAAAACATTAACCTCGGCACACGACCTGTCATTGCATATGAAAGTGCACACAGAACAGGAATCTGGAGGAGACCACCGTTGTGACATGTGCTATAAATCATTCAGTCAACTGTCTCTTCTCAGGCAGCATCAAGAAAGTCATGTTGGACAAGTTGTATATGAATGCACAGAGTGTGACAAAGCGTTTGCTTTCCCACATCTTCTAGAGGAACATCAAAAGACTCATGCTGCTGGACCATAAGTCTTTCCCCACCCTCAAAATCCTCCCACTAACTAAATGTAAAAAGACAAGTTGGACAATGGACATAGAAAAGACCTCCTGCCTCACTGATTGTGTTCAATTATCCAATGAACTCAGTCATGTcatagaaatgtgtttttttctggTGCTGTTTGCAGTCATCAAGCAATTTTGTGTTCACACTTCCATCTTAATCGTTTAACGTTTTCGATTGGCTCACAAGATGCTTAACTGTGTTTTTACCCCATGTCTTCAGAAATGTTTGGCCTACAACCTGGTTCGTGGAAAGGTTTAGATTATATTTACAGATTTCCTCCTATTTTAACATTTTATATCTGGTCAGAACTGCAGTTCATCGATACTATTACCTTTCCATAGAGCACTAATTTGTAACAGCCTCCATATTCAATTGTATATAGTTGTTTAATTGTCTTATGTGCCCTGAATGCAATTACAAAAGTTTCAGTTCACTTTTCACAAAGTGAAATGTAAGCTTTTGACCATGGAATGAATTCCTGACTCTGATAAAGTATAATGGGCTGTCACTGACAGTTTTAGGAATCCATATTGACCCGGTTGTTTTTTTAGTTTTGTTCCGCTTGCTAATCCATTACTCTGCCTAACCTTCTAAACATATTATCACTTAGACTTTAATAATGACGTGGGATACTTTTAGCCATGTATGATCCATGTAGCCCTTCTAAACTTTCCAAATTCAAAACCACAGCATTGTGTATATTATGTAAATATGACATGATCGTAACCATTTAAGTATTTGACATGAAATTGACCATTGTTGTAAGCTATGTTCAGAAACATTCTATCATTCATTCAAATGCCTTAAATATGTGTTTTGGATGTAGTAGTTCAAGGGCAACATTTGTTGACAGTTTTTCCTTATTGGGTGTTACTTTTGTATGAATGGTGTTTCAATCAAAATTCattaataaacaaaataaaccaGTCAACTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259202 lncRNA downstream 13977 14033621 ~ 14033969 (-) True G226605
TU259194 lncRNA downstream 63844 13983877 ~ 13984102 (-) True G226597
TU259193 lncRNA downstream 64149 13983486 ~ 13983797 (-) True G226596
TU259191 lncRNA downstream 65704 13981890 ~ 13982242 (-) True G226594
TU259190 lncRNA downstream 66305 13981337 ~ 13981641 (-) True G226593
TU259258 lncRNA upstream 46086 14125063 ~ 14126065 (-) True G226643
TU259263 lncRNA upstream 54313 14133290 ~ 14133632 (-) True G226648
TU259264 lncRNA upstream 55107 14134084 ~ 14134378 (-) True G226649
TU259266 lncRNA upstream 56518 14135495 ~ 14135725 (-) True G226651
TU259242 lncRNA upstream 69160 14148137 ~ 14152260 (-) True LOC110510806
XM_021591824.2 mRNA downstream 7121 14026102 ~ 14040825 (-) False LOC110510454
XM_021591831.2 mRNA downstream 7129 14026102 ~ 14040817 (-) False LOC110510454
XM_036975382.1 mRNA downstream 7129 14026102 ~ 14040817 (-) False LOC110510454
XM_036975383.1 mRNA downstream 8424 14026102 ~ 14039522 (-) False LOC110510454
XM_036975384.1 mRNA downstream 11905 14026102 ~ 14036041 (-) False LOC110510454
XM_021591865.2 mRNA upstream 5141 14084118 ~ 14096104 (-) True LOC110510492
XM_021591959.2 mRNA upstream 20424 14099401 ~ 14102281 (-) True fpr1
XM_036975413.1 mRNA upstream 69851 14148828 ~ 14192306 (-) False LOC110510806
XM_021591815.2 mRNA upstream 191676 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_036975394.1 mRNA upstream 191676 14270653 ~ 14277145 (-) False si:dkey-79d12.4
TU259117 other downstream 46138 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 120113 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 703571 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 823431 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 867674 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 349816 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 444203 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 444279 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 519812 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1457388 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile