RNA id: XM_021591959.2


Basic Information

Item Value
RNA id XM_021591959.2
length 1985
RNA type mRNA
GC content 0.46
exon number 2
gene id fpr1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14099401 ~ 14102281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGAACTGACGTCACACTTCAAGATACTACACAGTCTGCGCTCCTGACTACATCAGTGTAGTCGTACCGGTTTCGTTCCAGACAACGTCCTTCAAGCTGAAGAGACAACTCCGTTCGCCTGTTCTGATTGGAATATACACGTTATTCAAGGTTCTCAAACACAATGATGGCCTTAACCACAACTCCTTTGTATCCTGAGATCTGGACAGAGCTGTCTCACAACGACTCATCGCCAGGCAACTCGACAGACGACTATGAGGACTACCCTGACGAGCACGCAGAGCTCCGGCAGTCCCTCAACTTCATGTCCCTCATCGTTTACTGCCTGGCCTTCGTGCTGGGGGTTCTGGGAAATGGACTTGTCATCTGGGTGACGGGATTTAAGATGAAGAAGACGGTCAACACGGTGTGGTTCCTCAACCTGGCTGTGGCCGACTTCCTTTTCACAGCATTCCTGCCTCTGAGTGTGACCTACACAGCCATGGACTTTCACTGGCCCTTCGGCAAGTTCATGTGCAAGCTCAACTCCACGATCAGCTTCCTCAACATGTTCGCCAGCGTCTACATCCTGGTGGTCATCAGCATGGACAGGTGTGTGTCCGTGGTGCGCCCTGTCTGGGCCCAGAACCATCGGAACATACGCAAGGCATCCTGTATCAGTCTGGGTGTCTGGCTGTGGGCCCTGGTCCTCAGCTCCCCCTACTTTGTCTTCCGGGACATCGGGGCATCCTACAAGAACGAAGAAATCCTCAACTGCTTCAACAACTTTGCTTTCTCCGATGACTATGACACAAAGGAGGTGGCAGAGCTGCGAGTGTTCCGCCATCAGGCCATGATCGTAACCCGCTTCCTGCTGGGCTTCGTGGTGCCCTTCGCCATCATCGTCACTTGCTACGCCATCATCATCCACCGGCTCAAGAGGAACCGCAACCTGGCCAGCCACTCCGGGAGGCCATTCAAGATCATCGCTGCAGTCATCACAGCTTTCTTCCTGTGCTGGGCCCCCTACCACATCATGGCCCTGATCGAGATGGTGAACAACGCGGCGGCTGAGTTCAGCTACACGTTAGACCACGTCACCACCATCGGGGTCCCCATAGCCACCAGCCTGGCCTTCCTCAACAGCTGTCTGAACCCCCTGCTGTACGTGTTCATGGGCCAGGACTTCAAGGAGAAGCTGCGCAAGTCCGTTCTGACGGTTCTGGAGAGTGCCTTCACCGAGGAAGTGTCAAGGTCCAACCACACCTACACAAACTCTGGACTCACAAGCCGTAGCAAGGAGAAGTCCTATTCTGATGCTGAGGTATAGGGTCTTATATTATAATGAGAAAAACGTTATTGACCACATAATCTGGAAATTTGACTTTGGCTTTACGATAACATGATTGACATCCTTTAAAGCAAAGAAAATACAAACATTAGAAGGACCTTGTCATCAAGGTAATTCAATAAAGTTTTCAAACAGCTTGACACTTAGTTTAAGGGAAAGTTTAAGGCAGGATTTAAGAATTTGAACGCTGAGCATGTACTCAGATTTAACAAGGTAAATCTCCAGGACTGAATTCAAATCAAAAAGTTTGATTTCAATAATCTTTTGTGACTCAGAAAATGATGGGTTCTGTGGACACATTTCAGCACTGTTTTTGTATGAGCGATACAGTTACTATTGAGAATGTTGAAAGTGGGGTAGACTGTTAATAGGGAATACTAGATAAGATCAGAATAATTTGTATGATACACACATGTCATTGTTCAAGCTGAATATATAAATTGTCTATCTTTTCGTTCAAAGCCACTTTTTGTACATGcttgtttttgtaaaaaaaaattggctAATATTTAACAAGGTGACTATTATCTGTGGTTTAAACTTGTATAGTTTATTATTGAAGGAATGTTGTTTATCCTTAATATTTTGATGTATATGTTTGTATTTGTATACCTTTTTATGTATGTATGATGTTATTAAATGGTTGAATAGA

Function

GO: NA

KEGG:

id description
K04245 CMKLR1; chemokine-like receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259202 lncRNA downstream 65432 14033621 ~ 14033969 (-) True G226605
TU259194 lncRNA downstream 115299 13983877 ~ 13984102 (-) True G226597
TU259193 lncRNA downstream 115604 13983486 ~ 13983797 (-) True G226596
TU259191 lncRNA downstream 117159 13981890 ~ 13982242 (-) True G226594
TU259190 lncRNA downstream 117760 13981337 ~ 13981641 (-) True G226593
TU259258 lncRNA upstream 22782 14125063 ~ 14126065 (-) True G226643
TU259263 lncRNA upstream 31009 14133290 ~ 14133632 (-) True G226648
TU259264 lncRNA upstream 31803 14134084 ~ 14134378 (-) True G226649
TU259266 lncRNA upstream 33214 14135495 ~ 14135725 (-) True G226651
TU259242 lncRNA upstream 45856 14148137 ~ 14152260 (-) True LOC110510806
XM_021591865.2 mRNA downstream 3297 14084118 ~ 14096104 (-) True LOC110510492
XM_036975385.1 mRNA downstream 20416 14026102 ~ 14078985 (-) False LOC110510454
XM_021591752.2 mRNA downstream 20424 14047946 ~ 14078977 (-) True LOC110510454
XM_021591824.2 mRNA downstream 58576 14026102 ~ 14040825 (-) False LOC110510454
XM_021591831.2 mRNA downstream 58584 14026102 ~ 14040817 (-) False LOC110510454
XM_036975413.1 mRNA upstream 46547 14148828 ~ 14192306 (-) False LOC110510806
XM_021591815.2 mRNA upstream 168372 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_036975394.1 mRNA upstream 168372 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_021591800.2 mRNA upstream 168372 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA upstream 168372 14270653 ~ 14279142 (-) False si:dkey-79d12.4
TU259117 other downstream 97593 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 171568 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 755026 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 874886 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 919129 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 326512 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 420899 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 420975 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 496508 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1434084 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile