RNA id: XM_036975413.1


Basic Information

Item Value
RNA id XM_036975413.1
length 1901
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110510806
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14148137 ~ 14192306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTtaccctccctccgtctctcgccctcattttctctctctctctccatgctctctcCGCTACACCACCAATACTTTTTTCCCTGGCTGTGGCGTGTTTGTGCTTTAGCGAGTGTACAGCGAAACCAGTTCTGTGCTGATCCAGCGTGTGCTATCCCATATCCAGAGCCAGGAGCAGCGTACCTCTTGCCAACAGCCTGCCTCCACTCTGCTGCCTTTTCTGCTTTGATTTCCCACTGTCTGCTTTTCCACCAGACCTTTTCTTTCTTTAACCCTCTGCTCTCTTCCAAGAATGATCTAGGAAGAGGGGAAAGAAATAAGAGAAAGGTGTCTGTGTGAAGGGGAGATGAGGAggcagaaaaggagagagagaggggagaggactaGAGAAGACTGGAGTTAGGCTGCAACACGAGAGGCAAAGCAacgaggagagggagaaagaagagagcaACAAGGATCGAGGGATGATCGAGGTGGAATCGGGCCGAAAACGCAggaaaagggggggaaatatTGCCAGACTCATCCGACCTCTGCTGTGTGGGGACCGGACCCATCTCCTGTCTTCCTGGTCCTCAGCAGAACAGCCATGAGGTAGAGTCGGACATTTTGGAAACTTGTATCCAGCGACATCTTGCTAAGATGGATCCGAAGGCTTCTCTCTTCACCCTTCCACATCCTCCTTTAACCCTACACGACCATCATGTCCTCTGTCCCCATCTCACCCTACACAGTGTATGACGAGAGGTTACTGACAGCTGCAGACAATTTCATTGCGGCTGCCTTCAAACTGCCTAGAGCTTCTGGATGTTTCCCTCCATGTGGTTTTCAGACTACTGGTTATGTCTACAACTGCATCACCTGTCAGTATGACTCCTGTGAGTTCCCACTTGACTGTCCAAcaAAAAACATCACAGTCATGGAGAACAACCGGACACAGATGAGGTGTGACGTCCCCTTTCCCCTGCCTTATGAAATGAAAGTGGTCTGGAGGTTTGCAGAGGAGATCAGGACCCAGCAGGTGGATCAGTTTGAGGAGGTGACAGTAGGGATAGACCGGCTCTACTCTATCCCCTCAGCTGGTCTGCGACACCAGGGTACATACCAGTGTGAGATCTACTCTGACCAGCGCTCCTTAGTCAGACTTTACTACCACCTCATAGTCATCCCCCAGGTGGTTGTAGGCCACAGTGAGCTGCAGGAGATATTTGATCTGTCACTGCTTCCAGGGGGCCAAATTGTCACTGTGCCTGGTGGATGGTCCCTTGCCCTCCtccgtctcccccctccctctctcctcacggCCTGTCTGacttctctgctgctgctgctcttccTCTCCCTGGGGATTCTGCACTGGTGGTCGATAAAGAAAGAGAAGAGTGATGTGGAGCAAGCTGAAGACGATCCAGATTCAAGgaaatcatctGGAGGGTCATGGCAGGATgagcaggaagggtaccacatgagggaggaggatgtcttccctgtaacgcacagcgctgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgatacaccgccccagaccatgaccatccacctccaaatcgatcccgctccagagtacaggcctctgtgtaacgctcattccttcgacgataaacgcgaatctgaccatcacccctggtgagacaaaactatgACTCTTCAGAGAAGAgctctttttgccagtcctgtctggtccagcgacggtgggtttttGCCCATAGGGACGTTGTTGCCGTTGATGTCTGCTGAGcccctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgtggacagtctgagcactgatgaagggattgtgGGTTCCTGGTGTAatttgggcagttgttgttgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259266 lncRNA downstream 13103 14135495 ~ 14135725 (-) True G226651
TU259264 lncRNA downstream 14450 14134084 ~ 14134378 (-) True G226649
TU259263 lncRNA downstream 15196 14133290 ~ 14133632 (-) True G226648
TU259258 lncRNA downstream 22763 14125063 ~ 14126065 (-) True G226643
TU259202 lncRNA downstream 114859 14033621 ~ 14033969 (-) True G226605
TU259296 lncRNA upstream 26906 14219212 ~ 14219780 (-) True G226679
TU259306 lncRNA upstream 29823 14222129 ~ 14222362 (-) True G226689
TU259348 lncRNA upstream 40858 14233164 ~ 14233390 (-) True G226731
TU259353 lncRNA upstream 47697 14240003 ~ 14240269 (-) True G226736
TU259354 lncRNA upstream 48819 14241125 ~ 14241374 (-) True G226737
XM_021591959.2 mRNA downstream 46547 14099401 ~ 14102281 (-) True fpr1
XM_021591865.2 mRNA downstream 52724 14084118 ~ 14096104 (-) True LOC110510492
XM_036975385.1 mRNA downstream 69843 14026102 ~ 14078985 (-) False LOC110510454
XM_021591752.2 mRNA downstream 69851 14047946 ~ 14078977 (-) True LOC110510454
XM_021591824.2 mRNA downstream 108003 14026102 ~ 14040825 (-) False LOC110510454
XM_021591815.2 mRNA upstream 78347 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_036975394.1 mRNA upstream 78347 14270653 ~ 14277145 (-) False si:dkey-79d12.4
XM_021591800.2 mRNA upstream 78347 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_036975393.1 mRNA upstream 78347 14270653 ~ 14279142 (-) False si:dkey-79d12.4
XM_021591906.2 mRNA upstream 196892 14389198 ~ 14397282 (-) False LOC110510581
TU259117 other downstream 147020 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 220995 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 804453 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 924313 13223884 ~ 13224515 (-) True G226224
TU258728 other downstream 968556 13177178 ~ 13180272 (-) True G226187
TU259726 other upstream 236487 14428793 ~ 14475166 (-) True G227060
TU259714 other upstream 330874 14523180 ~ 14524854 (-) False psenen
TU259715 other upstream 330950 14523256 ~ 14524854 (-) True psenen
TU259832 other upstream 406483 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1344059 15536365 ~ 15538315 (-) True LOC110512327

Expression Profile