RNA id: XM_021591999.2


Basic Information

Item Value
RNA id XM_021591999.2
length 1356
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110510776
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14327225 ~ 14331310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTCGGCAAACAGAACACTGTATTCAAACCACACCTCTAAATGATAACAGATAAATGCTGTAACTCGACACACCCTATATCATTTCACCTCCTCCAGCTCCAAGTCAAAATGCACCTTATTGTACCCATCCTCGTGAGCGTGCTTCTTCCCAAAGCATATTCACTCAAATGCTTTGAGTGCATACCAGGAGAATCAGAAGCATGCACCAACAAGCAGACTGACTGTCTTTATCCAGCCCAATGTGGAAGCTCGCGGATCATATCCTATGCGGGTGATATAAAATTATTGGATATCAACGCGAAGTCTTGCGCGGTGTCTGCTGAGTGTCTCAGTGCATCAGTGAACTTCGGAATCGCGCGCACAACGATCGCCAGCAAATGCTGCAATACGGACCTCTGCAACTCCCAAAGCGTCCCTGAGTCCACTAAAGGCCTTCCTAATGGCAAGACATGCTTCACCTGTACCGGAACGGACTGCACGAGCACTCTGAGCTGCTTGGGAGACGAGGACCGCTGCATCTCAACAACAGTGAACACGGGTGGCGAGAAGATATCAATGAAGGGATGTGCCTCCAAGAGCATCTGTATGGGAGACGTGTCACAAGCACTGGGGTCCGCCATTGGCATGGAGATGAAGTGCTGCGAGGGCAACCTGTGTAACAACGCCCAGAGCATCGGACTGAGCCTCCTGATCCTGGTGACATCCATGGTCTCTGTCACCCTGTTCTACTGAGAGACACCTTGCCTTCACCACCTCCATCGTAACAGGAGCCTCCCTGTCATtgtccccctcccccccatctccCCATGCTACTGCCCCAGTCTCCACTATCTATCTACCTGTTGTGTGTATTAATAATGAATGTTATAGAATAGCCCCTTTCACTGGATACTTCCTTGGGGCGTCACATTATGTAGTGTTAACTCAACCCCTTCACCCCCGCTAGCGTAATGCTGCAGCCACCTGTGGAATGCACTATAGCCATTTAATTTTAGGGACAGCTCTCGCAAAAAAATACACACCCACTACAACCCACACCTACTTCCATCCTAcaacccctacacacactcacacccatcctcttctctcctcaagGCCCTGTGAGTCAGTGAGGCGTTTATGTTTGGCGAGGCATTTGCCAATCTAAGCAAGTGTGGTACATTGCTTCAAATCATTGGCATTGTTAGCTTTCACCTGTTTTTAATGTTCTGAATAACATAAAAGGCTATTGAATCCCATTTTTTACCTAGCAGAAATATACTTGAAATTAAAAATGTCACTGGATGTGTACAGTGTTAATGTGTTTGCTTGATAAACAAGATTAATtctgtaaattaaaaaaatatgaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259393 lncRNA upstream 13601 14313355 ~ 14313624 (+) True G226774
TU259325 lncRNA upstream 42262 14281074 ~ 14284963 (+) True LOC110510822
TU259343 lncRNA upstream 51283 14275657 ~ 14275942 (+) True G226726
TU259313 lncRNA upstream 56204 14270759 ~ 14271021 (+) True G226696
TU259311 lncRNA upstream 56926 14270097 ~ 14270299 (+) True G226694
TU259412 lncRNA downstream 29194 14360504 ~ 14360778 (+) True G226793
TU259416 lncRNA downstream 36149 14367459 ~ 14371078 (+) True G226797
TU259429 lncRNA downstream 57888 14389198 ~ 14389841 (+) False G226807
TU259420 lncRNA downstream 137035 14468345 ~ 14470263 (+) True LOC110510729
TU259479 lncRNA downstream 191871 14523181 ~ 14524514 (+) True G226845
XR_005051408.1 mRNA upstream 6502 14315597 ~ 14320723 (+) True LOC110510848
LOC110510822 mRNA upstream 43324 14278350 ~ 14283901 (+) False LOC110510822
XM_036975405.1 mRNA upstream 58611 14226829 ~ 14268614 (+) True LOC110510617
XM_036975406.1 mRNA upstream 63531 14226825 ~ 14263694 (+) False LOC110510617
XM_021591989.2 mRNA upstream 107409 14204907 ~ 14219816 (+) False LOC110510755
XR_005051409.1 mRNA downstream 74811 14406121 ~ 14406958 (+) True LOC118964341
XM_021591895.2 mRNA downstream 100630 14431940 ~ 14442914 (+) True LOC110510549
XM_021591976.2 mRNA downstream 136783 14468093 ~ 14471031 (+) False LOC110510729
XM_036975414.1 mRNA downstream 153612 14484922 ~ 14495193 (+) True LOC110510603
LOC110510592 mRNA downstream 164034 14495344 ~ 14498631 (+) True LOC110510592
TU259324 other upstream 47370 14278432 ~ 14279855 (+) False LOC110510822
TU258443 other upstream 280377 14046586 ~ 14046848 (+) True G225920
TU258417 other upstream 323299 14003302 ~ 14003926 (+) False LOC110503682
TU258418 other upstream 323299 14003302 ~ 14003926 (+) True LOC110503682
TU258352 other upstream 335204 13990236 ~ 13992021 (+) True G225859
TU259427 other downstream 58167 14389477 ~ 14390428 (+) True G226807
TU259410 other downstream 77562 14408872 ~ 14410081 (+) True G226791
TU259593 other downstream 372291 14703601 ~ 14703975 (+) True G226941
TU260071 other downstream 610840 14942150 ~ 14974977 (+) False LOC118944476
TU260067 other downstream 659210 14990520 ~ 14991294 (+) True LOC110510950

Expression Profile