RNA id: XM_021591976.2


Basic Information

Item Value
RNA id XM_021591976.2
length 2013
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110510729
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14468093 ~ 14471031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGCAATAACTGTTCTCTTCTCTTCGATGATTGCAGGCTCTCCAGACCCCCCCCTTTCTGTCAgtgagggaggaggtgaaggtggGGGAAGTGGTTTCTGCCTTCTGCTCTATGTCTCACTCCTGCCCATCTGATTCCCCTCTCCTAACCTGGAGCCACTCCGGAACACCCAGTGTCCAATCACAGCAGCTGACCAATGTCCAGTGGGAAGTGATGTCATCCCTGAACTTTACTCCCAGCAGCACTGATCACAACCAGTCTCTGGTCTGCACAGCAGCATACAGGGGAGGGAAGACAGTGAAACGTTTGAAAACTCTCAATGTCAAATATGCCCCAGTGGATGTGAAGGTGGAGGGAGTGTCCAGTGTGAAGGAAGGAGACTCTGTGGAGCTGAGATGCTCCAGTGACAGTAACCCTGCTGCCCACAGCTACCGCTGGCACAACAGTAGAGGACCTCTGCCCACCACTGGACCTACCATCACACTGGAGAATGTGACCAGACTCACTGAAGCCCTCTTCTGCACTGCCATCAACACAGAGGGACAAGGTCACTCCAACCCACTGAAGCTCAATGTAGAGTACCCCCCTGAGATCAAAGTGGGCTCTGCCTGCACTTCAGACGTCTCCATCGTAACCTGTCTGTGCATTGTGGATTAGGAGCCCACCGCCACCGTGGAGTGGTCTCTTCCGGCTGGACCCCTGCCCATCTTGCCCAGTACCAAGGTGGAGATGCAAGGGTCAGTTACCATGGTGATCCTACAGAGGGCACTAGGCTTCTCCGAGACCATCCACTGCCATGCCAGCAACACACAGGCGGGAGTCATTGTGACCAGCCAGTAACCAGCAAGCAGGACATTGATGCATCAAAGTGTGCTTCCTCAGATCCCTCAACATCAAGGTATTTTTTGGAGACTGAAGAGGATGGCGACCCATACGAGTGTGATGGTGGAGATGATGCATTCTATGGTAACGTGTGAACACAACAGGAAGCATGTGGAAGTCAGCTGGCCCAGAGGCAGTGGTACTCAGTCTGTCAAAGGTTCCAGTAAAATATTAACATTTTAACCCAATGTAGCAGAACAGGTGACTGCTTATATTTGTTAGCTTGATGTAGCTTTATGGTTCTTATGGCTAATGAATATGGTACATTCTTATTTGGGCTGTGGCTTTGTGTTATGGCTTTCACAAGGCATTTGTTTATCATCTATGGCTTGGGTGATTCAGAAGAGTTTTTACAAGATGTTTAATATGCACAATAAATCAACCAGTATTTAACGATAGATTGTTTCCCAATTCCCCAGCTGTCTGTTGAAATTGTGTCTTGAGTGTAATCTGAGGATAGATTACGAGTGTGGAACTTTCAGTGTTTCTCCACTTGGGGTTCCCCTTTCATTTATTGAGATTTTCAACGTCTGTTTATTTCCATGGGGTTTGAGCTATTTCACTGATTTTGTCAGCTTTCTTGACCCTCTCTATAAGAACATATCGGCCACGGGCATACAAATCCAAATACAGACAATTATTCATTGTTATTAGGTTCTGATTGTAGCTCTGTATACATTATTACATCTGGAGAAGAAAAAGAAAGTTTCACAAAACATGTTTTGGAACAAATCCTTCATATGATTTGAAAGGCatagaaacatttaaatgtattcaaTGTATTTTGTGAGAAAGGCCTCCCCATACTAATTCCTGGGAGTGCAGGAAAGTGTCCTTATCTTCAAACTCCCCCTCCACTAAAACTGTAGAGGTTGACAAGTCAAACGTGTGGTTTCGTTGGTTCAGCCCGAGTAATCTGCATATTTTTCTGGAAGGTCTGTTGGGAGAATATGGACCATTTGTTTATAGCCACACAGCATATTTTTACAGACCACTTCAGAACTGCAATGAGCTACGATAACTCTGGAACTTCCCCAATTACGGTGATCTtcaggaaatcaaatcaaatcacattttattagtcacatgcgcctaaCCAGCAgcgcagtttaaaaaaatacggataagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259429 lncRNA upstream 78252 14389198 ~ 14389841 (+) False G226807
TU259416 lncRNA upstream 97015 14367459 ~ 14371078 (+) True G226797
TU259412 lncRNA upstream 107315 14360504 ~ 14360778 (+) True G226793
TU259393 lncRNA upstream 154469 14313355 ~ 14313624 (+) True G226774
TU259325 lncRNA upstream 183130 14281074 ~ 14284963 (+) True LOC110510822
TU259479 lncRNA downstream 52150 14523181 ~ 14524514 (+) True G226845
TU259531 lncRNA downstream 147909 14618940 ~ 14623217 (+) True G226889
TU259583 lncRNA downstream 215173 14686204 ~ 14686513 (+) True G226931
TU259587 lncRNA downstream 218619 14689650 ~ 14689945 (+) True G226935
TU259551 lncRNA downstream 223585 14694616 ~ 14747965 (+) False G226902
XM_021591895.2 mRNA upstream 25179 14431940 ~ 14442914 (+) True LOC110510549
XR_005051409.1 mRNA upstream 61135 14406121 ~ 14406958 (+) True LOC118964341
XM_021591999.2 mRNA upstream 136783 14327225 ~ 14331310 (+) True LOC110510776
XR_005051408.1 mRNA upstream 147370 14315597 ~ 14320723 (+) True LOC110510848
LOC110510822 mRNA upstream 184192 14278350 ~ 14283901 (+) False LOC110510822
XM_036975414.1 mRNA downstream 13891 14484922 ~ 14495193 (+) True LOC110510603
LOC110510592 mRNA downstream 24313 14495344 ~ 14498631 (+) True LOC110510592
LOC110510788 mRNA downstream 29428 14500459 ~ 14501779 (+) True LOC110510788
NM_001165206.2 mRNA downstream 35170 14506201 ~ 14508126 (+) True si:dkey-42l23.2
XM_021591874.2 mRNA downstream 40628 14511659 ~ 14519712 (+) False proser3
TU259410 other upstream 58012 14408872 ~ 14410081 (+) True G226791
TU259427 other upstream 77665 14389477 ~ 14390428 (+) True G226807
TU259324 other upstream 188238 14278432 ~ 14279855 (+) False LOC110510822
TU258443 other upstream 421245 14046586 ~ 14046848 (+) True G225920
TU258418 other upstream 464167 14003302 ~ 14003926 (+) True LOC110503682
TU259593 other downstream 232570 14703601 ~ 14703975 (+) True G226941
TU260071 other downstream 471119 14942150 ~ 14974977 (+) False LOC118944476
TU260067 other downstream 519489 14990520 ~ 14991294 (+) True LOC110510950
TU260122 other downstream 526128 14997159 ~ 14998075 (+) False G227405
TU260123 other downstream 526128 14997159 ~ 14998075 (+) True G227405

Expression Profile