RNA id: TCONS_00028743


Basic Information

Item Value
RNA id TCONS_00028743
length 863
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_014524
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7237188 ~ 7240627 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttcaacaaaaaaaaatgaaacacataAAGGATTGCAACCAGCTCAGGGTCTCTTCAGTCCTGTACTGTACCTCCCGCTCGCTGCGTGTCTCTGCGTTCCTGCCTCACAAAAGCCCCCTCTGTTCTCCGCGCGCTTCACCCCGGCGCCCCACACCCTTCCTCAACACCCaagtggtacattccctttcctcCTCAAGCTTCCCTCATTGTGGAGCTCTTCACCTTTAGCTTCAGTCCATCTCAAAGCTGCAGTATTACAGTAGAGTCTGTGCCTCAGACGCCTCAAGCTGACGTGTGAAGCACAAACTGACCTGCTGCTTCACACACACTGAACAGACAACAGCGTAACGCTAAGACCTTTGTCTGTCTCGACACGACAGAAAGCACTGAGATTGACTAATGCTGTCCAAGTACTAATGTTGGAAAGTTTGGGATTGATCGTTTTCATGTTTACAATCGAAGTTGTAATAACTTTGCACTTGTTAAAGGTCCCATGACAttaaaaataagcttttatagttattagtatcagtattgttcacttttaggatatctataagctagtgctcACCAAAAAGTGACAAAGTTGGCGTTTAGaacatataaaactaatataaacatgtagagcttgtagtttgtcacttctgcctaaatagaTCACCGGTTTGATTCCCTTTATTCCCCTttaagacacttctcatttgatgcgcttggactaaaccactctcactggcagagtggTGATAAAACAatacgctattggctgtttttttaaaaagaggaggGGCTACaatatgtcccaccctctcttcatgtttcggttgagattacgtcaaacatcaaataaaaagatgcaaatttc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181874

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030150 lncRNA downstream 321615 6900956 ~ 6915573 (-) True XLOC_014517
TCONS_00030149 lncRNA downstream 335852 6892715 ~ 6901336 (-) True XLOC_014516
TCONS_00029754 lncRNA downstream 407371 6801438 ~ 6829817 (-) True XLOC_014513
TCONS_00029753 lncRNA downstream 640571 6592036 ~ 6596617 (-) True XLOC_014511
TCONS_00029752 lncRNA downstream 1253866 5968523 ~ 5983322 (-) True XLOC_014505
TCONS_00028747 lncRNA upstream 17712 7258339 ~ 7260919 (-) False XLOC_014525
TCONS_00028753 lncRNA upstream 35433 7276060 ~ 7283550 (-) False XLOC_014526
TCONS_00028754 lncRNA upstream 46903 7287530 ~ 7291703 (-) True XLOC_014526
TCONS_00028764 lncRNA upstream 260443 7501070 ~ 7501739 (-) True XLOC_014533
TCONS_00030151 lncRNA upstream 272491 7513118 ~ 7513678 (-) True XLOC_014534
TCONS_00028742 mRNA downstream 11982 7205896 ~ 7225206 (-) True XLOC_014523
TCONS_00028739 mRNA downstream 11998 7179740 ~ 7225190 (-) False XLOC_014523
TCONS_00028740 mRNA downstream 12081 7180402 ~ 7225107 (-) False XLOC_014523
TCONS_00028741 mRNA downstream 12128 7181288 ~ 7225060 (-) False XLOC_014523
TCONS_00028738 mRNA downstream 92603 7114259 ~ 7144585 (-) True XLOC_014522
TCONS_00028744 mRNA upstream 8414 7249041 ~ 7273005 (-) False XLOC_014525
TCONS_00028745 mRNA upstream 8414 7249041 ~ 7273057 (-) False XLOC_014525
TCONS_00028746 mRNA upstream 8483 7249110 ~ 7272921 (-) False XLOC_014525
TCONS_00028748 mRNA upstream 19864 7260491 ~ 7272921 (-) False XLOC_014525
TCONS_00028749 mRNA upstream 24749 7265376 ~ 7274844 (-) False XLOC_014525
TCONS_00028719 other downstream 998199 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 1393983 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028706 other downstream 1463153 5773921 ~ 5774035 (-) True XLOC_014501
TCONS_00028700 other downstream 1821273 5415799 ~ 5415915 (-) True XLOC_014495
TCONS_00028699 other downstream 1856481 5379593 ~ 5380707 (-) True XLOC_014494
TCONS_00028751 other upstream 35433 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028762 other upstream 227574 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028774 other upstream 584768 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028791 other upstream 1611913 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 2771871 10012498 ~ 10012614 (-) True XLOC_014580

Expression Profile

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