RNA id: XR_005051407.1


Basic Information

Item Value
RNA id XR_005051407.1
length 4029
RNA type mRNA
GC content 0.40
exon number 7
gene id psenen
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14519197 ~ 14524902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggggggggggcagcatggATGTCACATCCCCCTCTTCAGAAAACTGGAGCAGGAAGCGGAAAGGAACGAGTTTAAATGCTCTTTTGTGTTGATGTTTTGAGCTGTTTAACGTTAATTTGTCAAGCAATTTAGAGCTATTTGACATCTATTTAATTAAAGATTACAGGTCTCTTTGAAAAGCTGCCAATACTAAGGGGGAAATAACAGGAAATCGACATGAACCTAGAGCGCCTTCCAAATGAGGAGAAACTCACCCTCTGCAGGAAATACTATTTAGggggATTTGCATTCCTTCCATTCCTGTGGCTGGTGAATGTGGTGTGGTTTTTCAAAGAGGCCTTTGTAAAGCCAACATATACTGAACAACTCCAGATCAAAACATATGTAAAGCGTTCAGGGCTGGGGTTGCTACTGTGGGTTGCAGTACTCACCACATGGATAACCATATTCCAACACTTCAGAGCAGAATGGGGTGAGGTGGGCGACTACCTCTCCTTCACCATTCCACTTGGCATTCCCTGAGACAGACAAGGCGGGAAACAAGAAAGCTTCCTACTGTATAAAACTTGACCATGACAGAATTAATAGACAAATATAACAGGTTGAAATAGTTAAATGTGTAGTTGATCTCAATGGATAATCATAGTAATTTTTTCTGGGCTTTAATGAGTGGGAAGATGTCTTGTGAACACTGCACCTTTTTCCCAaaattgtgtgtagtgtgtggatGTCTCAACGCGTTTGAGTAAATTTGGAAGGTTAAACAGGCGAATGGCATGTATGACAAAAATAAATGGCAAATTCATAAACGTTCTAAATTAAATGGAAGTGTATGCTTTATTTGCTGTAATAAAGTTTTGAGCTTATATGCTAGATCGTGGTCTAGTGTGCATTTCATTAGACATTTGGCTCCTTTTGATAACAATATCCAATTAGCTTTGTGTTTAGTAAGTCAGTATTTGTGTAACACTGCTCACGATAACAACATACTTATTCCAGATCATTTATTCATATACTCCTTTGTACTCTCACAGTGTAAACAATTCAGACAGTGATGAGATATTTGCCAGTAAAGTACTTTATGATTGCAGCATTATGATTAAGTCCTTAAATGAGGTCTGCCTTAGGCCAATCTCTTATTATGAAACTCAATGCCTCTGTAGCAAATGTTACCACCCCTCCTCTTCAGAATCATGGTTGATGCTGTTTTTAGGTACTCAGTCAAAGACTACTTCTATTACCAACCAATGCCATCGCAGACACATCATCCCACCAGCTCCAGTACTTAACACATGTCCATTGAGTGCCAGGGTTGTATAAGTCACACAACTGTCTGCTCTAAATGGGGTCAAGAGGCAGTGGATGTAAACCCAAATCAGATGTGTGTGATGGATGGTCATAAGATACCCAATCGATGAGGTGCTAAGACTTGTGACATGCTGGAGGCTTATATGACATTGTTGTGCATGTGGTGTCAATGTAATTGTAGAACATGATGTTCACCCTGCATGTCATAATGACCTAAGGTAGTTTTAATACGCCCCCATTCCTATCCAGGACAAAGTGGCTCGGGGAGACTGGCCAACATTAGTCACGGATTTGTTCATCCCTCTGTTTGGGATTTCTATCTCTAGAAATGACAGAATTTTAAAAATATTGAATAATTTTCCAAATATATGCCAATGTGATTGAAGATTAGTGTGCTTAACACCTGCTTCACATTGATCAAAAGATCGTTACATAAACAATGTAACAGAAAAATCTGAAGTATGTAGACCtataaaataaatattgtaaCATCTTTAATATTCCAGTGTTTGGGAAAATATctttacatggtgtgacattGACAATGTTTGTGACCTTGTTCAACCTCTGTTTAATAAAGGGAGGTAGAAGATAATAATCCCCATTCCCCAATTATTAACCCGGGATAAACACCGTTTATACAGTGTAGGCCTAATGGATAATCATTTTAAGCCTGTCAGAAAATAAAATTGCAATATCTAATAACTTTTCAAGGAATCTGTAACAGCAATTATTGAGCAGTCCAGTCCGTTATGCAGTGTATCCCTAGAAGGAAGAGTCTGAACTGTTGCCTGGCAGAACACTGTATTCAGATTACCGCTTTTGGCTGTGTTGAATGCCAATTGCCAAATCACCAAAAGGGGCTCCACCAGAGCTCCCAACAGTTGTCAAGGAAAACAACTATGTTAGGTTAATTAAAAAGGTGCATGAGATGGAAACATTCCTAttatcacacatacatacactggcATGTGAATATTGCCACGTTTACGTggtagtcggaactaggaaactaaAATTCCCGACTTGCTAACTGGTCGTGGTTACAGTATGCAATCAGTTAGCAAATCAGACATTTacgagtttcctagttctgactaACACTTGAACGCGGCATATCACCCTTTACTGGCACATGCTGTCTGGCACGGATGCACTGTTTGGGGGGTTCAACCCTTTGTATCATAAATACAGACCTTAACTGCACTTCCACAATTTATGTCAGGGAAAAGGGCAGAGTCAGATACACGGACGCAGCAATCCATCCTATTGGCAGTCAGAACATAATACGATTTGCAGGCATCTCATAACGACGAGAAATGGACTTCGATCTGCCACCCAGTTTTCCAGCCAGTGGTATCGCATGGGAGAGGGTCCTGCCGCCTCTTCTTCCCGGGCAGAACGGGACATTCGGGCTGTACTCATTCACGCCGTCGGAGCTGCTCACCCCAGTGACAGAGCACACTGGCCCTGCACAGGTGTGTTGTGACCACAGTAGATTCACAGTTCAGGTTGATGTGAAACACTTCAACCCAGAGGAGCTGATGGTCAAGGTGACAGGAGACTTTGTGTAGGTCCAAGGGAAACACAAAGATAAAAAAGATGGGTCGGGGGTGGTGACGCGATAGTTCAACCGACGCTACAGGATTCCAGAGGGAGTGGACTCCATGGCTCTGTAGTCGGCTGTGTCGCCTGAAGGCTTCCTCATCATATCTGCCCCTATGCTGCAGGGGGAGAACTCCAGACACCTGTCCCACTCAGAATCATGAGCATACACACCCTAGGAATAAACACACAATCCATAGGaaccagtgttggggagtagtaaACTACAtgtaatttaactacattttgcagtagatGGTGGCAGTTCAAATCTTGGTAGTATTTAGTAGTTAACTTCTTTTTTtgccatgtagctaactactgggatTACACTACTTTTTTTGCAAATAGAAAATTAATTATGGGTGTAGTAAGCAataatttcctttctttttcggtATTACTCCTTTCTAGTTCTCACTTGAAACATAGTTGTTTAGTAtgctaaattacacattctgttaacatcttACTCCAGAGTGAactgttcttgcaatttgtagtctgacatttcaaaCTTAAATATGATCATTTATCACAAAGTAGTTTGATGTAGTGAACTCTTTTCAAATGCATTTTagttaaagaaaataaaaatgtagttAAGGGTAACTTTATTGTggcttaacttcttccagtgtgaagtaattggtagcttggtaaactatgcacacacaaaaatacaggcACTCTCCTCCAACAGACATATCAAACACTCACCAAGGAACTGGTGCCTGCCTGTACCAAAACACCCATTAACTACGCCATCACACCATTAAaattccctgctctctctctgagGTTTGTACATATTAACAGGACAGATTCCTCATTTAAAAGCATCCCTCATCCTAAAGAATCCCATTTAACTCAATCTTAAAATGTTTTTATGGAACCGTTCATTGTAAATATGATATAAAACCATTGAAAATTATGATTTGTATTGTGTGGAGTGTCTAATGCCCTCTAAGTCATGAGTAAATGTTTTAACACTCCGAGATTATCAAGTATGTTCACAAAACCCAACAGTAAGGTTGTTGTATATTTTCTAACTATTTATTGTAAGAAGAGAATTAGTTCAAAATAAATGCACTATATATTTttgtacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259761 lncRNA downstream 20343 14496793 ~ 14498854 (-) True G227094
TU259735 lncRNA downstream 89752 14424463 ~ 14429445 (-) True G227068
TU259731 lncRNA downstream 102319 14415060 ~ 14416878 (-) True G227065
TU259676 lncRNA downstream 109117 14409102 ~ 14410080 (-) True G227015
TU259730 lncRNA downstream 113047 14405901 ~ 14406150 (-) True G227064
TU259830 lncRNA upstream 73887 14598789 ~ 14637418 (-) False LOC110503689
TU259834 lncRNA upstream 73887 14598789 ~ 14638314 (-) True LOC110503689
TU259851 lncRNA upstream 94037 14618939 ~ 14623213 (-) True G227162
TU259855 lncRNA upstream 95366 14620268 ~ 14625116 (-) True G227163
TU259902 lncRNA upstream 189371 14714273 ~ 14714833 (-) True G227207
XR_005039678.1 mRNA downstream 7565 14508406 ~ 14511632 (-) False antol
XM_021581762.2 mRNA downstream 7565 14508412 ~ 14511632 (-) False antol
XM_021581769.2 mRNA downstream 7565 14508412 ~ 14511632 (-) False antol
NM_001165044.1 mRNA downstream 7677 14508794 ~ 14511520 (-) True antol
XM_021581777.2 mRNA downstream 7703 14508412 ~ 14511494 (-) False antol
LOC110503689 mRNA upstream 76000 14600902 ~ 14607768 (-) False LOC110503689
XM_021591970.2 mRNA upstream 114867 14639769 ~ 14642909 (-) True LOC110510719
XM_021591890.2 mRNA upstream 130962 14655864 ~ 14667500 (-) True zbtb32
XM_021591846.2 mRNA upstream 169704 14694606 ~ 14742899 (-) False aplp1
XM_021591853.2 mRNA upstream 169704 14694606 ~ 14742899 (-) True aplp1
TU259726 other downstream 44031 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 517389 13999736 ~ 14001808 (-) True LOC110538195
TU259125 other downstream 591364 13926674 ~ 13927833 (-) True wu:fe05a04
TU258842 other downstream 1174822 13344074 ~ 13344375 (-) True G226294
TU258769 other downstream 1294682 13223884 ~ 13224515 (-) True G226224
TU259832 other upstream 73887 14598789 ~ 14636710 (-) False LOC110503689
TU260846 other upstream 1011463 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 1076113 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 1181332 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 1262720 15787622 ~ 15791165 (-) False G228191

Expression Profile